RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CTAGE5O15320 804 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 RFX5P48382 616 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 FLIIQ13045 1269 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 ZNF330Q9Y3S2 320 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 GLRX3O76003 335 aaKnown RBP6.34□□□□□ -1.4
SYNE1-220ENST00000471834 NT5DC1Q5TFE4 455 aa6.34□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF662Q6ZS27 426 aa6.34□□□□□ -1.4
SYNE1-220ENST00000471834 APTXQ7Z2E3 356 aaKnown RBP6.34□□□□□ -1.4
SYNE1-220ENST00000471834 CDK19Q9BWU1 502 aa6.34□□□□□ -1.4
SYNE1-220ENST00000471834 V9GYY5 206 aaPredicted RBP6.34□□□□□ -1.4
SYNE1-220ENST00000471834 PIK3C2AO00443 1686 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 PALLDQ8WX93 1383 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 RTF1Q92541 710 aaKnown RBP6.33□□□□□ -1.4
SYNE1-220ENST00000471834 PAGR1Q9BTK6 254 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 PLA2G4AP47712 749 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 TUBB4BP68371 445 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 EXOSC10Q01780 885 aaKnown RBP6.33□□□□□ -1.4
SYNE1-220ENST00000471834 KRT222Q8N1A0 295 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 LRRCC1Q9C099 1032 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 YEATS4O95619 227 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 GNAI2P04899 355 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 LARGE1O95461 756 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 CCDC192P0DO97 292 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 PBX1P40424 430 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 AK2P54819 239 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 PGBD1Q96JS3 809 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-220ENST00000471834 EFCC1Q9HA90 598 aa6.33□□□□□ -1.4
SYNE1-220ENST00000471834 GOLGA6L4A6NEF3 574 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 TUBBP07437 444 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ITIH3Q06033 890 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 PDE4CQ08493 712 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF215Q9UL58 517 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CHMP3Q9Y3E7 222 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 SPEF2Q9C093 1822 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 TYRO3Q06418 890 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CCAR1Q8IX12 1150 aaKnown RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 EXOC4Q96A65 974 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 SMARCA5O60264 1052 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CHAF1AQ13111 956 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 TOB2Q14106 344 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 FEZ2Q9UHY8 353 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ATRNO75882 1429 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 TBC1D8O95759 1140 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ZNF18P17022 549 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 FBXO38Q6PIJ6 1188 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 LEO1Q8WVC0 666 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CHAMP1Q96JM3 812 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 FAM13BQ9NYF5 915 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CASP7P55210 303 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 GSCP56915 257 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 FMR1NBQ8N0W7 255 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 AARSP49588 968 aaKnown RBP eCLIP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 ZSCAN16Q9H4T2 348 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-220ENST00000471834 FBXO3Q9UK99 471 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 LRP5O75197 1615 aa6.32□□□□□ -1.4
SYNE1-220ENST00000471834 CCDC151A5D8V7 595 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 BHMG1C9JSJ3 638 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-220ENST00000471834 PFKFB2O60825 505 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 ILDR1Q86SU0 546 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-220ENST00000471834 TRIM6-TRIM34B2RNG4 842 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 G2E3Q7L622 706 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.31□□□□□ -1.4
SYNE1-220ENST00000471834 GSDMDP57764 484 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 NOL10Q9BSC4 688 aaKnown RBP6.31□□□□□ -1.4
SYNE1-220ENST00000471834 ECHDC1Q9NTX5 307 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 FUT8Q9BYC5 575 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 TAF5LO75529 589 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 LRRC8AQ8IWT6 810 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 GTF3C6Q969F1 213 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 CBX8Q9HC52 389 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 POLR3EQ9NVU0 708 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 PARP3Q9Y6F1 533 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 SEMA3FQ13275 785 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 NME9Q86XW9 330 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 IL17REQ8NFR9 667 aa6.31□□□□□ -1.4
SYNE1-220ENST00000471834 IPO4Q8TEX9 1081 aaKnown RBP6.31□□□□□ -1.4
SYNE1-220ENST00000471834 VIPAS39Q9H9C1 493 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 CTDP1Q9Y5B0 961 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 UBR1Q8IWV7 1749 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 ATF3P18847 181 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 FAM69CQ0P6D2 419 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 NUTM1Q86Y26 1132 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 THUMPD2Q9BTF0 503 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 L1RE1Q9UN81 338 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 RCAN1P53805 252 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 RTEL1Q9NZ71 1219 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 HDAC5Q9UQL6 1122 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 ZMYM6O95789 1325 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 ATXN2Q99700 1313 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 SHOX2O60902 331 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 SLU7O95391 586 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 PNMA6AP0CW24 399 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 COL9A3Q14050 684 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 MAP3K11Q16584 847 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 GGT6Q6P531 493 aa6.3□□□□□ -1.4
SYNE1-220ENST00000471834 NUDT16Q96DE0 195 aaKnown RBP6.3□□□□□ -1.4
SYNE1-220ENST00000471834 SH3TC1Q8TE82 1336 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms