RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PKP1Q13835 747 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 TWISTNBQ3B726 338 aaPredicted RBP11.61□□□□□ -0.55
HDAC3-205ENST00000469550 BCL2L12Q9HB09 334 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 ZC3H4Q9UPT8 1303 aaKnown RBP11.6□□□□□ -0.55
HDAC3-205ENST00000469550 RBM10P98175 930 aaKnown RBP11.6□□□□□ -0.55
HDAC3-205ENST00000469550 NFIXQ14938 502 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 C9orf131Q5VYM1 1079 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 SMAP1Q8IYB5 467 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-205ENST00000469550 MBIPQ9NS73 344 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 TMEM63CQ9P1W3 806 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 WDR90Q96KV7 1748 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 ANKRD31Q8N7Z5 1873 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 BCORQ6W2J9 1755 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 CEMIPQ8WUJ3 1361 aa11.6□□□□□ -0.55
HDAC3-205ENST00000469550 SDSP20132 328 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 EIF5P55010 431 aaKnown RBP11.59□□□□□ -0.55
HDAC3-205ENST00000469550 FAM13BQ9NYF5 915 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 PRDM4Q9UKN5 801 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 HEG1Q9ULI3 1381 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 CHRNA5P30532 468 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 APLP1P51693 650 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 ZGPATQ8N5A5 531 aaKnown RBP11.59□□□□□ -0.55
HDAC3-205ENST00000469550 RBM46Q8TBY0 533 aaKnown RBP11.59□□□□□ -0.55
HDAC3-205ENST00000469550 AK9Q5TCS8 1911 aa11.59□□□□□ -0.55
HDAC3-205ENST00000469550 A0A087WZG4 1122 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 STARD3NLO95772 234 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 PHACTR3Q96KR7 559 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 TEX13AQ9BXU3 409 aaPredicted RBP11.58□□□□□ -0.56
HDAC3-205ENST00000469550 OSBPL3Q9H4L5 887 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 NMRK2Q9NPI5 230 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 TIAM2Q8IVF5 1701 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 GNAT3A8MTJ3 354 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 ERC2O15083 957 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 CUL4AQ13619 759 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 TTC5Q8N0Z6 440 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 IL17REQ8NFR9 667 aa11.58□□□□□ -0.56
HDAC3-205ENST00000469550 SYAP1Q96A49 352 aaPredicted RBP11.58□□□□□ -0.56
HDAC3-205ENST00000469550 RBM27Q9P2N5 1060 aaKnown RBP11.58□□□□□ -0.56
HDAC3-205ENST00000469550 ARFGEF2Q9Y6D5 1785 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 COL11A2P13942 1736 aaPredicted RBP11.57□□□□□ -0.56
HDAC3-205ENST00000469550 SYCE3A1L190 88 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 BRD1O95696 1058 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 SERPINB2P05120 415 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 UVSSAQ2YD98 709 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 ZNF790Q6PG37 636 aa11.57□□□□□ -0.56
HDAC3-205ENST00000469550 INTS4Q96HW7 963 aaKnown RBP11.57□□□□□ -0.56
HDAC3-205ENST00000469550 TEFQ10587 303 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 IFFO2Q5TF58 517 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 CEP85Q6P2H3 762 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 C8orf58Q8NAV2 365 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 FAM184AQ8NB25 1140 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 IL17RAQ96F46 866 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 ZNF496Q96IT1 587 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-205ENST00000469550 RNF181Q9P0P0 153 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 DICER1Q9UPY3 1922 aaKnown RBP11.56□□□□□ -0.56
HDAC3-205ENST00000469550 CARMIL3Q8ND23 1372 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 CCDC88AQ3V6T2 1871 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 KIAA2012Q0VF49 1180 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 FSTL1Q12841 308 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 C16orf71Q8IYS4 520 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-205ENST00000469550 PRIMPOLQ96LW4 560 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 THUMPD2Q9BTF0 503 aaKnown RBP11.56□□□□□ -0.56
HDAC3-205ENST00000469550 TSPY26PQ9H489 355 aa11.56□□□□□ -0.56
HDAC3-205ENST00000469550 FER1L6Q2WGJ9 1857 aa11.55□□□□□ -0.56
HDAC3-205ENST00000469550 IL6STP40189 918 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-205ENST00000469550 ANAPC15P60006 121 aa11.55□□□□□ -0.56
HDAC3-205ENST00000469550 HMGN5P82970 282 aaKnown RBP11.54□□□□□ -0.56
HDAC3-205ENST00000469550 DNAJC5GQ8N7S2 189 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 TTLL6Q8N841 843 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 MYRIPQ8NFW9 859 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 TMX3Q96JJ7 454 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 FMNL2Q96PY5 1086 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 ELL2O00472 640 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-205ENST00000469550 GTF2F1P35269 517 aaKnown RBP eCLIP11.54□□□□□ -0.56
HDAC3-205ENST00000469550 C2CD5Q86YS7 1000 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 CCDC94Q9BW85 323 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-205ENST00000469550 NSFL1CQ9UNZ2 370 aaKnown RBP11.54□□□□□ -0.56
HDAC3-205ENST00000469550 PTPRCP08575 1304 aa11.54□□□□□ -0.56
HDAC3-205ENST00000469550 H0YIN7 160 aa11.53□□□□□ -0.56
HDAC3-205ENST00000469550 EPB41L2O43491 1005 aaKnown RBP11.53□□□□□ -0.56
HDAC3-205ENST00000469550 LMNB1P20700 586 aa11.53□□□□□ -0.56
HDAC3-205ENST00000469550 OTUD7AQ8TE49 926 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-205ENST00000469550 BRIP1Q9BX63 1249 aa11.53□□□□□ -0.56
HDAC3-205ENST00000469550 CEP350Q5VT06 3117 aa11.53□□□□□ -0.56
HDAC3-205ENST00000469550 LAMB4A4D0S4 1761 aa11.53□□□□□ -0.56
HDAC3-205ENST00000469550 RGL2O15211 777 aa11.52□□□□□ -0.56
HDAC3-205ENST00000469550 HMMRO75330 724 aa11.52□□□□□ -0.56
HDAC3-205ENST00000469550 UTP14CQ5TAP6 766 aaKnown RBP11.52□□□□□ -0.56
HDAC3-205ENST00000469550 TBC1D9BQ66K14 1250 aa11.52□□□□□ -0.56
HDAC3-205ENST00000469550 CAMTA2O94983 1202 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 MCCP23508 829 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 PDE6BP35913 854 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 PRELPP51888 382 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 NEK4P51957 841 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 RASSF7Q02833 373 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 PIBF1Q8WXW3 757 aa11.52□□□□□ -0.57
HDAC3-205ENST00000469550 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.52□□□□□ -0.57
HDAC3-205ENST00000469550 LTBP3Q9NS15 1303 aa11.51□□□□□ -0.57
HDAC3-205ENST00000469550 NFKBIEO00221 500 aa11.51□□□□□ -0.57
HDAC3-205ENST00000469550 LETM1O95202 739 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms