RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 PSMD2Q13200 908 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 CFHR5Q9BXR6 569 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 GSX2Q9BZM3 304 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 NDFIP2Q9NV92 336 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 MARK1Q9P0L2 795 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 PHF24Q9UPV7 400 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 SPG7Q9UQ90 795 aa7.17□□□□□ -1.26
CDC42BPA-211ENST00000466538 BNIP3LO60238 219 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 ITGA6P23229 1130 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 FOXR1Q6PIV2 292 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 CCDC74AQ96AQ1 378 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 NLRP2Q9NX02 1062 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 TMEM63CQ9P1W3 806 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 GMPR2Q9P2T1 348 aaKnown RBP7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 FOXD3Q9UJU5 478 aaPredicted RBP7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 AK5Q9Y6K8 562 aa7.16□□□□□ -1.26
CDC42BPA-211ENST00000466538 TCF3P15923 654 aa7.15□□□□□ -1.26
CDC42BPA-211ENST00000466538 FAM182BQ5T319 152 aa7.15□□□□□ -1.26
CDC42BPA-211ENST00000466538 BACH2Q9BYV9 841 aa7.15□□□□□ -1.26
CDC42BPA-211ENST00000466538 ATXN7L1Q9ULK2 861 aaPredicted RBP7.15□□□□□ -1.26
CDC42BPA-211ENST00000466538 SASH3O75995 380 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 MAP3K6O95382 1288 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 RECKO95980 971 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 CES1P23141 567 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 GALNT12Q8IXK2 581 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 C1orf127Q8N9H9 656 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 PNMA5Q96PV4 448 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 SETDB2Q96T68 719 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 SRCIN1Q9C0H9 1055 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 CUEDC1Q9NWM3 386 aaPredicted RBP7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 CNTN3Q9P232 1028 aa7.14□□□□□ -1.27
CDC42BPA-211ENST00000466538 DCDC2BA2VCK2 349 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 SCAMP3O14828 347 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 TARSP26639 723 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 NEUROD1Q13562 356 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 TSNAXIP1Q2TAA8 658 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 OR13H1Q8NG92 308 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 ZNF837Q96EG3 531 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 TRERF1Q96PN7 1200 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 CHRDQ9H2X0 955 aa7.13□□□□□ -1.27
CDC42BPA-211ENST00000466538 C11orf95C9JLR9 678 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 EDN3P14138 238 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 SNRPBP14678 240 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 EIF4BP23588 611 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 SOX18P35713 384 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 SPEM2Q0P670 501 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 USPL1Q5W0Q7 1092 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 TMEM87AQ8NBN3 555 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 NANOS1Q8WY41 292 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 GTPBP3Q969Y2 492 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 FAM161BQ96MY7 647 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 STRN4Q9NRL3 753 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 METTL5Q9NRN9 209 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 PPP4R2Q9NY27 417 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 TLR7Q9NYK1 1049 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 VTI1BQ9UEU0 232 aa7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-211ENST00000466538 PHF20L1A8MW92 1017 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 EREGO14944 169 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 MMP20O60882 483 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 PPFIA3O75145 1194 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 PSAPP07602 524 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 RARAP10276 462 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 HOXD8P13378 290 aaPredicted RBP7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 VEGFBP49765 207 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 KIAA0319Q5VV43 1072 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 SV2AQ7L0J3 742 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 EPS8L3Q8TE67 593 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 ABHD17AQ96GS6 310 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 RNF19AQ9NV58 838 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 SALL4Q9UJQ4 1053 aa7.11□□□□□ -1.27
CDC42BPA-211ENST00000466538 FGFR3P22607 806 aa7.1□□□□□ -1.27
CDC42BPA-211ENST00000466538 LDLRAD1Q5T700 205 aa7.1□□□□□ -1.27
CDC42BPA-211ENST00000466538 C12orf49Q9H741 205 aa7.1□□□□□ -1.27
CDC42BPA-211ENST00000466538 ZFATQ9P243 1243 aa7.1□□□□□ -1.27
CDC42BPA-211ENST00000466538 NFKB1P19838 968 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 PLAURQ03405 335 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 HYAL2Q12891 473 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 PCSK7Q16549 785 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 Q6ZNB5 142 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 KRT25Q7Z3Z0 450 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 VWA5B2Q8N398 1253 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 CRELD1Q96HD1 420 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 SUV39H2Q9H5I1 410 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 FAM8A1Q9UBU6 413 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 HCN2Q9UL51 889 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 TRAK1Q9UPV9 953 aa7.09□□□□□ -1.27
CDC42BPA-211ENST00000466538 GADD45BO75293 160 aaPredicted RBP7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 KIF4AO95239 1232 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 POLR3DP05423 398 aaPredicted RBP7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 CD33P20138 364 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 NRLP54845 237 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 NPAS3Q8IXF0 933 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 BHMTQ93088 406 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 SLC30A3Q99726 388 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 OSBPL7Q9BZF2 842 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 NPHS2Q9NP85 383 aa7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 AVENQ9NQS1 362 aaPredicted RBP7.08□□□□□ -1.28
CDC42BPA-211ENST00000466538 CDC14CA4D256 554 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms