RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 SF3B3Q15393 1217 aaKnown RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 MRPL50Q8N5N7 158 aaKnown RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 LINS1Q8NG48 757 aa16.43■□□□□ 0.22
COL5A1-206ENST00000465877 GRAPLQ8TC17 118 aaPredicted RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 SSH1Q8WYL5 1049 aa16.43■□□□□ 0.22
COL5A1-206ENST00000465877 JARID2Q92833 1246 aaPredicted RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 BCL2L13Q9BXK5 485 aa16.43■□□□□ 0.22
COL5A1-206ENST00000465877 ZBED9Q6R2W3 1325 aa16.43■□□□□ 0.22
COL5A1-206ENST00000465877 GCKRQ14397 625 aa16.42■□□□□ 0.22
COL5A1-206ENST00000465877 ALDH1L2Q3SY69 923 aa16.42■□□□□ 0.22
COL5A1-206ENST00000465877 CC2D2BQ6DHV5 1058 aa16.42■□□□□ 0.22
COL5A1-206ENST00000465877 RTKN2Q8IZC4 609 aa16.42■□□□□ 0.22
COL5A1-206ENST00000465877 GPBP1L1Q9HC44 474 aaPredicted RBP16.42■□□□□ 0.22
COL5A1-206ENST00000465877 PTPRCP08575 1304 aa16.42■□□□□ 0.22
COL5A1-206ENST00000465877 PDE8AO60658 829 aa16.41■□□□□ 0.22
COL5A1-206ENST00000465877 UBE3BQ7Z3V4 1068 aa16.41■□□□□ 0.22
COL5A1-206ENST00000465877 SMC4Q9NTJ3 1288 aa16.41■□□□□ 0.22
COL5A1-206ENST00000465877 CTSWP56202 376 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 CCDC152Q4G0S7 254 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 BEND3Q5T5X7 828 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 PSMD1Q99460 953 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 ATP6V0A2Q9Y487 856 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 SCN4AP35499 1836 aa16.4■□□□□ 0.22
COL5A1-206ENST00000465877 RTL9Q8NET4 1388 aa16.39■□□□□ 0.21
COL5A1-206ENST00000465877 TMC4Q7Z404 712 aa16.39■□□□□ 0.21
COL5A1-206ENST00000465877 CELF1Q92879 486 aaKnown RBP16.39■□□□□ 0.21
COL5A1-206ENST00000465877 ZNF277Q9NRM2 450 aaPredicted RBP16.39■□□□□ 0.21
COL5A1-206ENST00000465877 PSME4Q14997 1843 aa16.39■□□□□ 0.21
COL5A1-206ENST00000465877 H7C1W4 665 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 BBOX1O75936 387 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 IARSP41252 1262 aaKnown RBP16.38■□□□□ 0.21
COL5A1-206ENST00000465877 CASP7P55210 303 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 GRIPAP1Q4V328 841 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 SLC4A10Q6U841 1118 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 CCDC85AQ96PX6 553 aaPredicted RBP16.38■□□□□ 0.21
COL5A1-206ENST00000465877 TMX4Q9H1E5 349 aaPredicted RBP16.38■□□□□ 0.21
COL5A1-206ENST00000465877 KDM2BQ8NHM5 1336 aa16.38■□□□□ 0.21
COL5A1-206ENST00000465877 SP8Q8IXZ3 490 aa16.37■□□□□ 0.21
COL5A1-206ENST00000465877 SEC31BQ9NQW1 1179 aa16.37■□□□□ 0.21
COL5A1-206ENST00000465877 PLA2G12BQ9BX93 195 aa16.36■□□□□ 0.21
COL5A1-206ENST00000465877 SRCIN1Q9C0H9 1055 aa16.36■□□□□ 0.21
COL5A1-206ENST00000465877 KIF16BQ96L93 1317 aa16.36■□□□□ 0.21
COL5A1-206ENST00000465877 GRM8O00222 908 aa16.35■□□□□ 0.21
COL5A1-206ENST00000465877 ALDH1L1O75891 902 aa16.35■□□□□ 0.21
COL5A1-206ENST00000465877 RARSP54136 660 aaKnown RBP16.35■□□□□ 0.21
COL5A1-206ENST00000465877 TTLL11Q8NHH1 800 aa16.35■□□□□ 0.21
COL5A1-206ENST00000465877 GREM2Q9H772 168 aa16.35■□□□□ 0.21
COL5A1-206ENST00000465877 ZNF646O15015 1829 aaPredicted RBP16.35■□□□□ 0.21
COL5A1-206ENST00000465877 BRPF1P55201 1214 aaPredicted RBP16.34■□□□□ 0.21
COL5A1-206ENST00000465877 FAM161AQ3B820 660 aa16.34■□□□□ 0.21
COL5A1-206ENST00000465877 DPP8Q6V1X1 898 aaPredicted RBP16.34■□□□□ 0.21
COL5A1-206ENST00000465877 NMRK2Q9NPI5 230 aa16.34■□□□□ 0.21
COL5A1-206ENST00000465877 GLTPD2A6NH11 291 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 KIF3CO14782 793 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 RPS8P62241 208 aaKnown RBP16.33■□□□□ 0.2
COL5A1-206ENST00000465877 MPNDQ8N594 471 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 SUPT20HQ8NEM7 779 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 CDC5LQ99459 802 aaKnown RBP16.33■□□□□ 0.2
COL5A1-206ENST00000465877 RTFDC1Q9BY42 306 aaPredicted RBP16.33■□□□□ 0.2
COL5A1-206ENST00000465877 ZNF541Q9H0D2 1346 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 SCN9AQ15858 1988 aa16.33■□□□□ 0.2
COL5A1-206ENST00000465877 PPIP5K2O43314 1243 aa16.32■□□□□ 0.2
COL5A1-206ENST00000465877 AOC3Q16853 763 aa16.32■□□□□ 0.2
COL5A1-206ENST00000465877 ANKRD18AQ8IVF6 992 aa16.32■□□□□ 0.2
COL5A1-206ENST00000465877 C9orf78Q9NZ63 289 aaPredicted RBP16.32■□□□□ 0.2
COL5A1-206ENST00000465877 ADAMTSL1Q8N6G6 1762 aa16.31■□□□□ 0.2
COL5A1-206ENST00000465877 LARGE2Q8N3Y3 721 aa16.31■□□□□ 0.2
COL5A1-206ENST00000465877 JDP2Q8WYK2 163 aa16.31■□□□□ 0.2
COL5A1-206ENST00000465877 NOB1Q9ULX3 412 aaKnown RBP16.31■□□□□ 0.2
COL5A1-206ENST00000465877 UTYO14607 1347 aa16.3■□□□□ 0.2
COL5A1-206ENST00000465877 CSF1RP07333 972 aa16.3■□□□□ 0.2
COL5A1-206ENST00000465877 ITGA6P23229 1130 aa16.3■□□□□ 0.2
COL5A1-206ENST00000465877 GPSM2P81274 684 aa16.3■□□□□ 0.2
COL5A1-206ENST00000465877 DPY19L2Q6NUT2 758 aa16.3■□□□□ 0.2
COL5A1-206ENST00000465877 NSFL1CQ9UNZ2 370 aaKnown RBP16.3■□□□□ 0.2
COL5A1-206ENST00000465877 FZD9O00144 591 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 NBPF7P0C2Y1 421 aaPredicted RBP16.29■□□□□ 0.2
COL5A1-206ENST00000465877 FOXO4P98177 505 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 KIAA2012Q0VF49 1180 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 EPHA10Q5JZY3 1008 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 NIM1KQ8IY84 436 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 API5Q9BZZ5 524 aaKnown RBP16.29■□□□□ 0.2
COL5A1-206ENST00000465877 VPS33BQ9H267 617 aa16.29■□□□□ 0.2
COL5A1-206ENST00000465877 XDHP47989 1333 aa16.28■□□□□ 0.2
COL5A1-206ENST00000465877 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
COL5A1-206ENST00000465877 PODXL2Q9NZ53 605 aa16.28■□□□□ 0.2
COL5A1-206ENST00000465877 CHMP3Q9Y3E7 222 aa16.28■□□□□ 0.2
COL5A1-206ENST00000465877 ARAP2Q8WZ64 1704 aa16.28■□□□□ 0.2
COL5A1-206ENST00000465877 ANKRD18BA2A2Z9 1011 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 BCAR3O75815 825 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 DDNO94850 711 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-206ENST00000465877 UFL1O94874 794 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 IGHMBP2P38935 993 aaKnown RBP16.27■□□□□ 0.2
COL5A1-206ENST00000465877 CCT4P50991 539 aaKnown RBP16.27■□□□□ 0.2
COL5A1-206ENST00000465877 C1QTNF8P60827 252 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 TBC1D16Q8TBP0 767 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 GPR101Q96P66 508 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-206ENST00000465877 RRAGCQ9HB90 399 aa16.27■□□□□ 0.2
COL5A1-206ENST00000465877 BSDC1Q9NW68 430 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-206ENST00000465877 ANKIB1Q9P2G1 1089 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms