RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	HCLS1	P14317	486 aa	Predicted RBP	13.48	□□□□□ -0.25
UBR4-208	ENST00000459947	ATF7IP	Q6VMQ6	1270 aa		13.48	□□□□□ -0.25
UBR4-208	ENST00000459947	CWF19L2	Q2TBE0	894 aa	Known RBP	13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	UBE3B	Q7Z3V4	1068 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	SP8	Q8IXZ3	490 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947		F6X3S4	739 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	GNAI3	P08754	354 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	CCDC24	Q8N4L8	307 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	ABCC4	O15439	1325 aa		13.47	□□□□□ -0.25
UBR4-208	ENST00000459947	INTS3	Q68E01	1043 aa	Known RBP	13.46	□□□□□ -0.25
UBR4-208	ENST00000459947	TAOK3	Q9H2K8	898 aa		13.46	□□□□□ -0.25
UBR4-208	ENST00000459947	ATP6V0A2	Q9Y487	856 aa		13.46	□□□□□ -0.25
UBR4-208	ENST00000459947	PSMD1	Q99460	953 aa		13.46	□□□□□ -0.25
UBR4-208	ENST00000459947	BCL2L13	Q9BXK5	485 aa		13.46	□□□□□ -0.25
UBR4-208	ENST00000459947	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.46	□□□□□ -0.26
UBR4-208	ENST00000459947	ANKRD18A	Q8IVF6	992 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	RCAN3	Q9UKA8	241 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	LRRC37A	A6NMS7	1700 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	LMNB1	P20700	586 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	IGHMBP2	P38935	993 aa	Known RBP	13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	CASP7	P55210	303 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	FER1L6	Q2WGJ9	1857 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	FTSJ3	Q8IY81	847 aa	Known RBP	13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	SLX4	Q8IY92	1834 aa		13.45	□□□□□ -0.26
UBR4-208	ENST00000459947	RPS8	P62241	208 aa	Known RBP	13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	C7orf43	Q8WVR3	580 aa		13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	CACNA1S	Q13698	1873 aa		13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	ANKRD18B	A2A2Z9	1011 aa		13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	CSF1R	P07333	972 aa		13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	EYA3	Q99504	573 aa		13.44	□□□□□ -0.26
UBR4-208	ENST00000459947	C21orf2	O43822	256 aa		13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	TTLL11	Q8NHH1	800 aa		13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	UBTFL1	P0CB47	393 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	DZIP1L	Q8IYY4	767 aa	Known RBP	13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	FRAT1	Q92837	279 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	ANKRD2	Q9GZV1	360 aa		13.43	□□□□□ -0.26
UBR4-208	ENST00000459947	IFIT5	Q13325	482 aa	Known RBP	13.42	□□□□□ -0.26
UBR4-208	ENST00000459947	CCDC57	Q2TAC2	916 aa		13.42	□□□□□ -0.26
UBR4-208	ENST00000459947	FBXO3	Q9UK99	471 aa		13.42	□□□□□ -0.26
UBR4-208	ENST00000459947	TRIM27	P14373	513 aa		13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	TAF7L	Q5H9L4	462 aa		13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	MPND	Q8N594	471 aa		13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	DICER1	Q9UPY3	1922 aa	Known RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	C3orf67	Q6ZVT6	689 aa		13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	YY1	P25490	414 aa		13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	RABL6	Q3YEC7	729 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	RTL5	Q5HYW3	569 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	DPP8	Q6V1X1	898 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	BSDC1	Q9NW68	430 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR4-208	ENST00000459947	SYNE4	Q8N205	404 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	MPHOSPH8	Q99549	860 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	BCAR3	O75815	825 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	ATP2B4	P23634	1241 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	PODXL2	Q9NZ53	605 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	PDE3A	Q14432	1141 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	XDH	P47989	1333 aa		13.4	□□□□□ -0.26
UBR4-208	ENST00000459947	C9orf131	Q5VYM1	1079 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	RNF181	Q9P0P0	153 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	NFKBIE	O00221	500 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	ITGA6	P23229	1130 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	IARS	P41252	1262 aa	Known RBP	13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	FOXO4	P98177	505 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	JDP2	Q8WYK2	163 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	USP44	Q9H0E7	712 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	KDM2B	Q8NHM5	1336 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	SNED1	Q8TER0	1413 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	LMBR1L	Q6UX01	489 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	LEMD3	Q9Y2U8	911 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	CHMP3	Q9Y3E7	222 aa		13.39	□□□□□ -0.27
UBR4-208	ENST00000459947	SBF1	O95248	1867 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	SUCLG2	Q96I99	432 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	GNAI2	P04899	355 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	CELF1	Q92879	486 aa	Known RBP	13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	GREM2	Q9H772	168 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	GGA1	Q9UJY5	639 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	DDX19B	Q9UMR2	479 aa		13.38	□□□□□ -0.27
UBR4-208	ENST00000459947	TIAM2	Q8IVF5	1701 aa		13.37	□□□□□ -0.27
UBR4-208	ENST00000459947	DPY19L2	Q6NUT2	758 aa		13.37	□□□□□ -0.27
UBR4-208	ENST00000459947	NIM1K	Q8IY84	436 aa		13.37	□□□□□ -0.27
UBR4-208	ENST00000459947	FAM161A	Q3B820	660 aa		13.37	□□□□□ -0.27
UBR4-208	ENST00000459947	WWC3	Q9ULE0	1092 aa		13.37	□□□□□ -0.27
UBR4-208	ENST00000459947	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	EIF6	P56537	245 aa	Known RBP	13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	RASSF7	Q02833	373 aa		13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	JARID2	Q92833	1246 aa	Predicted RBP	13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	YTHDC1	Q96MU7	727 aa	Known RBP	13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	MTX1	Q13505	466 aa		13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	LARGE2	Q8N3Y3	721 aa		13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	SEC31B	Q9NQW1	1179 aa		13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	ANKIB1	Q9P2G1	1089 aa		13.36	□□□□□ -0.27
UBR4-208	ENST00000459947	MROH5	Q6ZUA9	1318 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	KIAA2012	Q0VF49	1180 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	AAMP	Q13685	434 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	ITPRIP	Q8IWB1	547 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	BICC1	Q9H694	974 aa	Known RBP	13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	PPIP5K2	O43314	1243 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	TMEM57	Q8N5G2	664 aa		13.35	□□□□□ -0.27
UBR4-208	ENST00000459947	CNNM1	Q9NRU3	951 aa		13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms