RNA–Protein interactions for RNA: ENST00000443563.5

HDAC6-211, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-211ENST00000443563 ABCC4O15439 1325 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 GRM8O00222 908 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 YY1P25490 414 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 CCT4P50991 539 aaKnown RBP13.69□□□□□ -0.22
HDAC6-211ENST00000443563 GRAPQ13588 217 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 RTKN2Q8IZC4 609 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 GRAPLQ8TC17 118 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-211ENST00000443563 C7orf43Q8WVR3 580 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 PLA2G12BQ9BX93 195 aa13.69□□□□□ -0.22
HDAC6-211ENST00000443563 LTBP3Q9NS15 1303 aa13.68□□□□□ -0.22
HDAC6-211ENST00000443563 CCDC88AQ3V6T2 1871 aa13.68□□□□□ -0.22
HDAC6-211ENST00000443563 CTSWP56202 376 aa13.68□□□□□ -0.22
HDAC6-211ENST00000443563 JARID2Q92833 1246 aaPredicted RBP13.68□□□□□ -0.22
HDAC6-211ENST00000443563 BCAR3O75815 825 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 CASP7P55210 303 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 FRAT1Q92837 279 aaPredicted RBP13.67□□□□□ -0.22
HDAC6-211ENST00000443563 TAOK3Q9H2K8 898 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 ATP6V0A2Q9Y487 856 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 TAF1P21675 1872 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 RTL9Q8NET4 1388 aa13.67□□□□□ -0.22
HDAC6-211ENST00000443563 DICER1Q9UPY3 1922 aaKnown RBP13.66□□□□□ -0.22
HDAC6-211ENST00000443563 LMNB1P20700 586 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 FKBP4Q02790 459 aaKnown RBP eCLIP13.66□□□□□ -0.22
HDAC6-211ENST00000443563 ZKSCAN2Q63HK3 967 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 ATF7IPQ6VMQ6 1270 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 SP8Q8IXZ3 490 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 TTLL11Q8NHH1 800 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 CDC5LQ99459 802 aaKnown RBP13.66□□□□□ -0.22
HDAC6-211ENST00000443563 HDAC5Q9UQL6 1122 aa13.66□□□□□ -0.22
HDAC6-211ENST00000443563 UTYO14607 1347 aa13.65□□□□□ -0.22
HDAC6-211ENST00000443563 LRRC37AA6NMS7 1700 aa13.65□□□□□ -0.22
HDAC6-211ENST00000443563 NFKBIEO00221 500 aa13.65□□□□□ -0.22
HDAC6-211ENST00000443563 RPS8P62241 208 aaKnown RBP13.65□□□□□ -0.22
HDAC6-211ENST00000443563 RASSF7Q02833 373 aa13.65□□□□□ -0.22
HDAC6-211ENST00000443563 YTHDC1Q96MU7 727 aaKnown RBP13.65□□□□□ -0.22
HDAC6-211ENST00000443563 PSMD1Q99460 953 aa13.65□□□□□ -0.22
HDAC6-211ENST00000443563 ZC3H4Q9UPT8 1303 aaKnown RBP13.64□□□□□ -0.23
HDAC6-211ENST00000443563 CSF1RP07333 972 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 C9orf131Q5VYM1 1079 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
HDAC6-211ENST00000443563 ANKRD18AQ8IVF6 992 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 SUPT20HQ8NEM7 779 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 RNF181Q9P0P0 153 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 TIAM2Q8IVF5 1701 aa13.64□□□□□ -0.23
HDAC6-211ENST00000443563 SPEF2Q9C093 1822 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 MS4A1P11836 297 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 TRIM27P14373 513 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 FOXO4P98177 505 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 CELF1Q92879 486 aaKnown RBP13.63□□□□□ -0.23
HDAC6-211ENST00000443563 CCDC85AQ96PX6 553 aaPredicted RBP13.63□□□□□ -0.23
HDAC6-211ENST00000443563 VPS33BQ9H267 617 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 GREM2Q9H772 168 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 SEC31BQ9NQW1 1179 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 RCAN3Q9UKA8 241 aa13.63□□□□□ -0.23
HDAC6-211ENST00000443563 ANKRD18BA2A2Z9 1011 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 NBPF7P0C2Y1 421 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-211ENST00000443563 ITGA6P23229 1130 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 IGHMBP2P38935 993 aaKnown RBP13.62□□□□□ -0.23
HDAC6-211ENST00000443563 OLFM4Q6UX06 510 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 DPP8Q6V1X1 898 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-211ENST00000443563 FTSJ3Q8IY81 847 aaKnown RBP13.62□□□□□ -0.23
HDAC6-211ENST00000443563 MPNDQ8N594 471 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 USP44Q9H0E7 712 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 SNED1Q8TER0 1413 aa13.62□□□□□ -0.23
HDAC6-211ENST00000443563 GNAI3P08754 354 aa13.61□□□□□ -0.23
HDAC6-211ENST00000443563 UBTFL1P0CB47 393 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-211ENST00000443563 IFIT5Q13325 482 aaKnown RBP13.61□□□□□ -0.23
HDAC6-211ENST00000443563 CCDC57Q2TAC2 916 aa13.61□□□□□ -0.23
HDAC6-211ENST00000443563 LMBR1LQ6UX01 489 aa13.61□□□□□ -0.23
HDAC6-211ENST00000443563 SUCLG2Q96I99 432 aa13.61□□□□□ -0.23
HDAC6-211ENST00000443563 CHMP3Q9Y3E7 222 aa13.61□□□□□ -0.23
HDAC6-211ENST00000443563 IARSP41252 1262 aaKnown RBP13.6□□□□□ -0.23
HDAC6-211ENST00000443563 FAM161AQ3B820 660 aa13.6□□□□□ -0.23
HDAC6-211ENST00000443563 TAF7LQ5H9L4 462 aa13.6□□□□□ -0.23
HDAC6-211ENST00000443563 DZIP1LQ8IYY4 767 aaKnown RBP13.6□□□□□ -0.23
HDAC6-211ENST00000443563 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-211ENST00000443563 CLUAP1Q96AJ1 413 aa13.6□□□□□ -0.23
HDAC6-211ENST00000443563 MPHOSPH8Q99549 860 aa13.6□□□□□ -0.23
HDAC6-211ENST00000443563 RTFDC1Q9BY42 306 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-211ENST00000443563 BSDC1Q9NW68 430 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-211ENST00000443563 RABL6Q3YEC7 729 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-211ENST00000443563 JDP2Q8WYK2 163 aa13.59□□□□□ -0.23
HDAC6-211ENST00000443563 BICC1Q9H694 974 aaKnown RBP13.59□□□□□ -0.23
HDAC6-211ENST00000443563 ZNF277Q9NRM2 450 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-211ENST00000443563 PODXL2Q9NZ53 605 aa13.59□□□□□ -0.23
HDAC6-211ENST00000443563 NSFL1CQ9UNZ2 370 aaKnown RBP13.59□□□□□ -0.23
HDAC6-211ENST00000443563 LTBP1Q14766 1721 aa13.59□□□□□ -0.23
HDAC6-211ENST00000443563 EPHA10Q5JZY3 1008 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 KAZALD1Q96I82 304 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 EYA3Q99504 573 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 ANKIB1Q9P2G1 1089 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 COL4A1P02462 1669 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 XDHP47989 1333 aa13.58□□□□□ -0.24
HDAC6-211ENST00000443563 C6orf229H3BNL8 230 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 PRELPP51888 382 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 GPSM2P81274 684 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 DPY19L2Q6NUT2 758 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 LARGE2Q8N3Y3 721 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 TMEM57Q8N5G2 664 aa13.57□□□□□ -0.24
HDAC6-211ENST00000443563 ANKRD2Q9GZV1 360 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms