RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 MCM5P33992 734 aa12.43□□□□□ -0.42
CD44-210ENST00000434472 NKX1-1Q15270 411 aaPredicted RBP12.43□□□□□ -0.42
CD44-210ENST00000434472 ME3Q16798 604 aa12.43□□□□□ -0.42
CD44-210ENST00000434472 HAUS7Q99871 368 aa12.43□□□□□ -0.42
CD44-210ENST00000434472 CWC25Q9NXE8 425 aaPredicted RBP12.43□□□□□ -0.42
CD44-210ENST00000434472 DBNLQ9UJU6 430 aaKnown RBP12.43□□□□□ -0.42
CD44-210ENST00000434472 CNPY2Q9Y2B0 182 aa12.43□□□□□ -0.42
CD44-210ENST00000434472 GLI3P10071 1580 aa12.42□□□□□ -0.42
CD44-210ENST00000434472 CCDC191Q8NCU4 936 aa12.42□□□□□ -0.42
CD44-210ENST00000434472 PRDM11Q9NQV5 511 aa12.42□□□□□ -0.42
CD44-210ENST00000434472 CCDC39Q9UFE4 941 aa12.42□□□□□ -0.42
CD44-210ENST00000434472 ATP5J2-PTCD1G3V325 749 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 PTCD1O75127 700 aaKnown RBP12.41□□□□□ -0.42
CD44-210ENST00000434472 IL15P40933 162 aaPredicted RBP12.41□□□□□ -0.42
CD44-210ENST00000434472 FOXO4P98177 505 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 MCMDC2Q4G0Z9 681 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 LMBR1LQ6UX01 489 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 TOM1L2Q6ZVM7 507 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 LARP6Q9BRS8 491 aaKnown RBP12.41□□□□□ -0.42
CD44-210ENST00000434472 ANO8Q9HCE9 1232 aaPredicted RBP12.41□□□□□ -0.42
CD44-210ENST00000434472 ATG3Q9NT62 314 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 TPCN1Q9ULQ1 816 aa12.41□□□□□ -0.42
CD44-210ENST00000434472 FOXD4L6Q3SYB3 417 aaPredicted RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 LARP1BQ659C4 914 aaKnown RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 FOXD4L3Q6VB84 417 aaPredicted RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 BRINP3Q76B58 766 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 PALLDQ8WX93 1383 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 NAP1L5Q96NT1 182 aaPredicted RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 DBNDD2Q9BQY9 259 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 CARD10Q9BWT7 1032 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 GDPD2Q9HCC8 539 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 HELLSQ9NRZ9 838 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 UBR2Q8IWV8 1755 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 SH3TC1Q8TE82 1336 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 NBPF26B4DH59 902 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 CIAO1O76071 339 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 HMGB1P09429 215 aaKnown RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 IL2RBP14784 551 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 PIP4K2AP48426 406 aaPredicted RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 ST3GAL1Q11201 340 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 NBPF14Q5TI25 921 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 NBPF10Q6P3W6 841 aaKnown RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 NBPF15Q8N660 670 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 KBTBD3Q8NAB2 608 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 CHMP4CQ96CF2 233 aa12.4□□□□□ -0.42
CD44-210ENST00000434472 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 NOL7Q9UMY1 257 aaKnown RBP12.4□□□□□ -0.42
CD44-210ENST00000434472 PAPPAQ13219 1627 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 VPS37CA5D8V6 355 aaPredicted RBP12.39□□□□□ -0.43
CD44-210ENST00000434472 FIBPO43427 364 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 KRT85P78386 507 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 ZNF589Q86UQ0 364 aaPredicted RBP12.39□□□□□ -0.43
CD44-210ENST00000434472 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.39□□□□□ -0.43
CD44-210ENST00000434472 JARID2Q92833 1246 aaPredicted RBP12.39□□□□□ -0.43
CD44-210ENST00000434472 NEK1Q96PY6 1258 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 DNAJC2Q99543 621 aaKnown RBP12.39□□□□□ -0.43
CD44-210ENST00000434472 TEX13AQ9BXU3 409 aaPredicted RBP12.39□□□□□ -0.43
CD44-210ENST00000434472 FBXO3Q9UK99 471 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 KCPQ6ZWJ8 1503 aa12.39□□□□□ -0.43
CD44-210ENST00000434472 TNS2Q63HR2 1409 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 ELP1O95163 1332 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 SOS2Q07890 1332 aaPredicted RBP12.38□□□□□ -0.43
CD44-210ENST00000434472 NUP188Q5SRE5 1749 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 EYA2O00167 538 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 TOB2Q14106 344 aaPredicted RBP12.38□□□□□ -0.43
CD44-210ENST00000434472 LRRFIP1Q32MZ4 808 aaKnown RBP12.38□□□□□ -0.43
CD44-210ENST00000434472 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.38□□□□□ -0.43
CD44-210ENST00000434472 NECAB1Q8N987 351 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 CHMP3Q9Y3E7 222 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 COL5A2P05997 1499 aaPredicted RBP12.38□□□□□ -0.43
CD44-210ENST00000434472 ZNF609O15014 1411 aa12.38□□□□□ -0.43
CD44-210ENST00000434472 ZNF500O60304 480 aaPredicted RBP12.37□□□□□ -0.43
CD44-210ENST00000434472 DNM1Q05193 864 aaKnown RBP12.37□□□□□ -0.43
CD44-210ENST00000434472 TTLL7Q6ZT98 887 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 ATG9AQ7Z3C6 839 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 DSCC1Q9BVC3 393 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 OFD1O75665 1012 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 RNF214Q8ND24 703 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 DDX54Q8TDD1 881 aaKnown RBP12.37□□□□□ -0.43
CD44-210ENST00000434472 EDC3Q96F86 508 aaKnown RBP12.37□□□□□ -0.43
CD44-210ENST00000434472 NEUROD6Q96NK8 337 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 SCAND2PQ9GZW5 306 aaPredicted RBP12.37□□□□□ -0.43
CD44-210ENST00000434472 PAG1Q9NWQ8 432 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 ZKSCAN5Q9Y2L8 839 aa12.37□□□□□ -0.43
CD44-210ENST00000434472 SPEF2Q9C093 1822 aa12.36□□□□□ -0.43
CD44-210ENST00000434472 TPM2P07951 284 aa12.36□□□□□ -0.43
CD44-210ENST00000434472 GTF3C6Q969F1 213 aa12.36□□□□□ -0.43
CD44-210ENST00000434472 LLPHQ9BRT6 129 aaKnown RBP12.36□□□□□ -0.43
CD44-210ENST00000434472 ISCA1Q9BUE6 129 aa12.36□□□□□ -0.43
CD44-210ENST00000434472 AKAP2Q9Y2D5 859 aa12.36□□□□□ -0.43
CD44-210ENST00000434472 TJP1Q07157 1748 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 A1BGP04217 495 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 PTMAP06454 111 aaKnown RBP12.35□□□□□ -0.43
CD44-210ENST00000434472 TERF1P54274 439 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 TRIM28Q13263 835 aaKnown RBP12.35□□□□□ -0.43
CD44-210ENST00000434472 ZMYM1Q5SVZ6 1142 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 DDX46Q7L014 1031 aaKnown RBP12.35□□□□□ -0.43
CD44-210ENST00000434472 VSIG10Q8N0Z9 540 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 CEP126Q9P2H0 1117 aa12.35□□□□□ -0.43
CD44-210ENST00000434472 KIF3AQ9Y496 699 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms