RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 KNTC1P50748 2209 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 RAD17O75943 681 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PPP2R2AP63151 447 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PRAM1Q96QH2 718 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PARK7Q99497 189 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 FMN1Q68DA7 1419 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 FGD6Q6ZV73 1430 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 GRXCR2A6NFK2 248 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PSMD2Q13200 908 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PTGDRQ13258 359 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 GLT1D1Q96MS3 346 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 CABP5Q9NP86 173 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 SDK1Q7Z5N4 2213 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CCL15-CCL14A0A0B4J2E2 113 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 F8W031 263 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 DPYSL4O14531 572 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 ONECUT3O60422 494 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CCDC192P0DO97 292 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 SMARCA1P28370 1054 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CCL15Q16663 113 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CCDC27Q2M243 656 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 PRAMEF18Q5VWM3 479 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 TIFAQ96CG3 184 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 EVA1BQ9NVM1 165 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 ANGPTL2Q9UKU9 493 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 MRPS17Q9Y2R5 130 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 TBX22Q9Y458 520 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 U2SURPO15042 1029 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 LAMTOR5O43504 91 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 DCXO43602 365 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 PLIN1O60240 522 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 PHKA1P46020 1223 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 LMNB2Q03252 620 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 NEXNQ0ZGT2 675 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 FOXC1Q12948 553 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 PREPLQ4J6C6 727 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 LAMC3Q9Y6N6 1575 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 IFIT2P09913 472 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 PYGMP11217 842 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CCINQ13939 588 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 GRIPAP1Q4V328 841 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 USP50Q70EL3 339 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 RNF180Q86T96 592 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 WWC1Q8IX03 1113 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 CD99L2Q8TCZ2 262 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 ARNTL2Q8WYA1 636 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 SLITRK6Q9H5Y7 841 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 COG6Q9Y2V7 657 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 RRP7AQ9Y3A4 280 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 FAM135BQ49AJ0 1406 aa3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 MAGI1Q96QZ7 1491 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-205ENST00000426576 FAM86C2PA6NEL3 165 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 ADCY3O60266 1144 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 POLR3DP05423 398 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 PSMC4P43686 418 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 PPP2R2BQ00005 443 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 KIAA1841Q6NSI8 718 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 Q7L0L9 218 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 C12orf40Q86WS4 652 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 ZSCAN1Q8NBB4 408 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 COL25A1Q9BXS0 654 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 TOMM22Q9NS69 142 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 POLIQ9UNA4 740 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 LAS1LQ9Y4W2 734 aaKnown RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 FLNBO75369 2602 aaKnown RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 NAIPQ13075 1403 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 FOXD2O60548 495 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 DRD2P14416 443 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 GTF2IP78347 998 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 APBA1Q02410 837 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 PPIGQ13427 754 aaKnown RBP eCLIP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 KIZQ2M2Z5 673 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 HS2ST1Q7LGA3 356 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 PPP1R42Q7Z4L9 355 aa3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 GLIS2Q9BZE0 524 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 ZNF277Q9NRM2 450 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 GNL3LQ9NVN8 582 aaKnown RBP3.4□□□□□ -1.86
CCDC88A-205ENST00000426576 RAD50Q92878 1312 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 FAM208BQ5VWN6 2430 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 ST20-MTHFSA0A0A6YYL1 179 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 UBE2Q2LH0YL09 131 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 POTEB2H3BUK9 544 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 PLSCR1O15162 318 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 NR1I2O75469 434 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 GBP2P32456 591 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 MTHFSP49914 203 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 COPB1P53618 953 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 CCDC144CPQ8IYA2 1237 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 COPRSQ9NQ92 184 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 AKAP7Q9P0M2 348 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 NCOR2Q9Y618 2525 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 PQBP1O60828 265 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 REC8O95072 547 aa3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 HIRAP54198 1017 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 TEX13AQ9BXU3 409 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-205ENST00000426576 MYPNQ86TC9 1320 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 MAPK8IP3Q9UPT6 1336 aa3.39□□□□□ -1.87
CCDC88A-205ENST00000426576 GPR179Q6PRD1 2367 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms