RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 DDX46Q7L014 1031 aaKnown RBP30.84■■■□□ 2.53
VEGFA-209ENST00000425836 SUCLG2Q96I99 432 aa30.84■■■□□ 2.53
VEGFA-209ENST00000425836 CCDC152Q4G0S7 254 aa30.83■■■□□ 2.53
VEGFA-209ENST00000425836 GOLGA6L2Q8N9W4 650 aaPredicted RBP30.83■■■□□ 2.53
VEGFA-209ENST00000425836 PANK1Q8TE04 598 aa30.83■■■□□ 2.53
VEGFA-209ENST00000425836 KAZALD1Q96I82 304 aa30.83■■■□□ 2.53
VEGFA-209ENST00000425836 CCDC85AQ96PX6 553 aaPredicted RBP30.83■■■□□ 2.53
VEGFA-209ENST00000425836 MS4A1P11836 297 aa30.83■■■□□ 2.53
VEGFA-209ENST00000425836 EPHA10Q5JZY3 1008 aa30.83■■■□□ 2.53
VEGFA-209ENST00000425836 DLEC1Q9Y238 1755 aa30.82■■■□□ 2.53
VEGFA-209ENST00000425836 CSF1RP07333 972 aa30.82■■■□□ 2.52
VEGFA-209ENST00000425836 MEIS3Q99687 375 aa30.82■■■□□ 2.52
VEGFA-209ENST00000425836 DCAF8L1A6NGE4 600 aa30.8■■■□□ 2.52
VEGFA-209ENST00000425836 GRAPQ13588 217 aa30.8■■■□□ 2.52
VEGFA-209ENST00000425836 GRAPLQ8TC17 118 aaPredicted RBP30.8■■■□□ 2.52
VEGFA-209ENST00000425836 GREM2Q9H772 168 aa30.8■■■□□ 2.52
VEGFA-209ENST00000425836 LAMB2P55268 1798 aa30.8■■■□□ 2.52
VEGFA-209ENST00000425836 BRCA1P38398 1863 aaKnown RBP30.8■■■□□ 2.52
VEGFA-209ENST00000425836 GOLGB1Q14789 3259 aaKnown RBP30.8■■■□□ 2.52
VEGFA-209ENST00000425836 UBTFL1P0CB47 393 aaPredicted RBP30.79■■■□□ 2.52
VEGFA-209ENST00000425836 C7orf43Q8WVR3 580 aa30.79■■■□□ 2.52
VEGFA-209ENST00000425836 SEC31BQ9NQW1 1179 aa30.79■■■□□ 2.52
VEGFA-209ENST00000425836 ITPRIPQ8IWB1 547 aa30.79■■■□□ 2.52
VEGFA-209ENST00000425836 ZNF219Q9P2Y4 722 aaPredicted RBP30.79■■■□□ 2.52
VEGFA-209ENST00000425836 C21orf2O43822 256 aa30.78■■■□□ 2.52
VEGFA-209ENST00000425836 LMBR1LQ6UX01 489 aa30.78■■■□□ 2.52
VEGFA-209ENST00000425836 CELF1Q92879 486 aaKnown RBP30.78■■■□□ 2.52
VEGFA-209ENST00000425836 GRIN3BO60391 1043 aa30.77■■■□□ 2.52
VEGFA-209ENST00000425836 BBOX1O75936 387 aa30.77■■■□□ 2.52
VEGFA-209ENST00000425836 C20orf194Q5TEA3 1177 aa30.77■■■□□ 2.52
VEGFA-209ENST00000425836 BICC1Q9H694 974 aaKnown RBP30.77■■■□□ 2.52
VEGFA-209ENST00000425836 GNAI3P08754 354 aa30.76■■■□□ 2.52
VEGFA-209ENST00000425836 RTL9Q8NET4 1388 aa30.76■■■□□ 2.51
VEGFA-209ENST00000425836 PPEF1O14829 653 aaPredicted RBP30.75■■■□□ 2.51
VEGFA-209ENST00000425836 RRP1P56182 461 aaKnown RBP30.75■■■□□ 2.51
VEGFA-209ENST00000425836 PDE3AQ14432 1141 aa30.75■■■□□ 2.51
VEGFA-209ENST00000425836 FAM161AQ3B820 660 aa30.75■■■□□ 2.51
VEGFA-209ENST00000425836 RABL6Q3YEC7 729 aaPredicted RBP30.75■■■□□ 2.51
VEGFA-209ENST00000425836 ANKRD44Q8N8A2 993 aa30.75■■■□□ 2.51
VEGFA-209ENST00000425836 RPS8P62241 208 aaKnown RBP30.74■■■□□ 2.51
VEGFA-209ENST00000425836 OLFM4Q6UX06 510 aa30.74■■■□□ 2.51
VEGFA-209ENST00000425836 SLX4Q8IY92 1834 aa30.73■■■□□ 2.51
VEGFA-209ENST00000425836 ZBTB7BO15156 539 aaPredicted RBP30.73■■■□□ 2.51
VEGFA-209ENST00000425836 ITGA6P23229 1130 aa30.73■■■□□ 2.51
VEGFA-209ENST00000425836 SLC51AQ86UW1 340 aa30.73■■■□□ 2.51
VEGFA-209ENST00000425836 HDAC5Q9UQL6 1122 aa30.73■■■□□ 2.51
VEGFA-209ENST00000425836 CHMP3Q9Y3E7 222 aa30.73■■■□□ 2.51
VEGFA-209ENST00000425836 LRRFIP2Q9Y608 721 aaKnown RBP30.73■■■□□ 2.51
VEGFA-209ENST00000425836 MVPQ14764 893 aaKnown RBP30.72■■■□□ 2.51
VEGFA-209ENST00000425836 COG6Q9Y2V7 657 aa30.72■■■□□ 2.51
VEGFA-209ENST00000425836 ARHGAP27Q6ZUM4 889 aa30.71■■■□□ 2.51
VEGFA-209ENST00000425836 ATP6V0A2Q9Y487 856 aa30.71■■■□□ 2.51
VEGFA-209ENST00000425836 COL4A1P02462 1669 aa30.71■■■□□ 2.51
VEGFA-209ENST00000425836 SOGA3Q5TF21 947 aa30.71■■■□□ 2.51
VEGFA-209ENST00000425836 CDC5LQ99459 802 aaKnown RBP30.71■■■□□ 2.51
VEGFA-209ENST00000425836 IFIT5Q13325 482 aaKnown RBP30.7■■■□□ 2.5
VEGFA-209ENST00000425836 TMC4Q7Z404 712 aa30.7■■■□□ 2.5
VEGFA-209ENST00000425836 ANKRD18AQ8IVF6 992 aa30.7■■■□□ 2.5
VEGFA-209ENST00000425836 SP8Q8IXZ3 490 aa30.7■■■□□ 2.5
VEGFA-209ENST00000425836 ANKRD18BA2A2Z9 1011 aa30.69■■■□□ 2.5
VEGFA-209ENST00000425836 CCDC93Q567U6 631 aa30.68■■■□□ 2.5
VEGFA-209ENST00000425836 CC2D2BQ6DHV5 1058 aa30.68■■■□□ 2.5
VEGFA-209ENST00000425836 GNAI2P04899 355 aa30.67■■■□□ 2.5
VEGFA-209ENST00000425836 CCDC57Q2TAC2 916 aa30.67■■■□□ 2.5
VEGFA-209ENST00000425836 UTRNP46939 3433 aa30.67■■■□□ 2.5
VEGFA-209ENST00000425836 ARFGEF1Q9Y6D6 1849 aa30.66■■■□□ 2.5
VEGFA-209ENST00000425836 DDX19BQ9UMR2 479 aa30.66■■■□□ 2.5
VEGFA-209ENST00000425836 NFKBIEO00221 500 aa30.65■■■□□ 2.5
VEGFA-209ENST00000425836 RTKN2Q8IZC4 609 aa30.65■■■□□ 2.5
VEGFA-209ENST00000425836 TMX4Q9H1E5 349 aaPredicted RBP30.65■■■□□ 2.5
VEGFA-209ENST00000425836 SUPT16HQ9Y5B9 1047 aaKnown RBP30.65■■■□□ 2.5
VEGFA-209ENST00000425836 MYH3P11055 1940 aa30.64■■■□□ 2.5
VEGFA-209ENST00000425836 IGHMBP2P38935 993 aaKnown RBP30.64■■■□□ 2.5
VEGFA-209ENST00000425836 BSDC1Q9NW68 430 aaPredicted RBP30.64■■■□□ 2.5
VEGFA-209ENST00000425836 TAF1P21675 1872 aa30.63■■■□□ 2.49
VEGFA-209ENST00000425836 ZNF594Q96JF6 807 aaPredicted RBP30.63■■■□□ 2.49
VEGFA-209ENST00000425836 SNED1Q8TER0 1413 aa30.63■■■□□ 2.49
VEGFA-209ENST00000425836 CACNA1SQ13698 1873 aa30.62■■■□□ 2.49
VEGFA-209ENST00000425836 RASSF7Q02833 373 aa30.62■■■□□ 2.49
VEGFA-209ENST00000425836 GRIPAP1Q4V328 841 aa30.62■■■□□ 2.49
VEGFA-209ENST00000425836 MPHOSPH8Q99549 860 aa30.62■■■□□ 2.49
VEGFA-209ENST00000425836 C1orf115Q9H7X2 142 aa30.62■■■□□ 2.49
VEGFA-209ENST00000425836 TAF7LQ5H9L4 462 aa30.61■■■□□ 2.49
VEGFA-209ENST00000425836 RFX5P48382 616 aaPredicted RBP30.6■■■□□ 2.49
VEGFA-209ENST00000425836 TAOK3Q9H2K8 898 aa30.6■■■□□ 2.49
VEGFA-209ENST00000425836 ZBTB40Q9NUA8 1239 aa30.6■■■□□ 2.49
VEGFA-209ENST00000425836 FKBP4Q02790 459 aaKnown RBP eCLIP30.59■■■□□ 2.49
VEGFA-209ENST00000425836 MTX1Q13505 466 aa30.59■■■□□ 2.49
VEGFA-209ENST00000425836 MINPP1Q9UNW1 487 aa30.59■■■□□ 2.49
VEGFA-209ENST00000425836 LTBP3Q9NS15 1303 aa30.59■■■□□ 2.49
VEGFA-209ENST00000425836 GPSM2P81274 684 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 MPNDQ8N594 471 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 CHMP4BQ9H444 224 aaKnown RBP30.58■■■□□ 2.49
VEGFA-209ENST00000425836 PRELPP51888 382 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 DPP8Q6V1X1 898 aaPredicted RBP30.58■■■□□ 2.49
VEGFA-209ENST00000425836 LDHAL6AQ6ZMR3 332 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 KLHDC4Q8TBB5 520 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 PSMD1Q99460 953 aa30.58■■■□□ 2.49
VEGFA-209ENST00000425836 NSFL1CQ9UNZ2 370 aaKnown RBP30.58■■■□□ 2.49
VEGFA-209ENST00000425836 SRGAP3O43295 1099 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms