RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SP8Q8IXZ3 490 aa15.05■□□□□ -0
USP4-204ENST00000416417 TNS4Q8IZW8 715 aa15.05■□□□□ -0
USP4-204ENST00000416417 MPNDQ8N594 471 aa15.05■□□□□ -0
USP4-204ENST00000416417 GRAPLQ8TC17 118 aaPredicted RBP15.05■□□□□ -0
USP4-204ENST00000416417 ISCA1Q9BUE6 129 aa15.05■□□□□ -0
USP4-204ENST00000416417 PHAXQ9H814 394 aaKnown RBP15.05■□□□□ -0
USP4-204ENST00000416417 BBOX1O75936 387 aa15.04■□□□□ -0
USP4-204ENST00000416417 RAD17O75943 681 aa15.04■□□□□ -0
USP4-204ENST00000416417 ZNF853P0CG23 659 aa15.04■□□□□ -0
USP4-204ENST00000416417 GRIPAP1Q4V328 841 aa15.04■□□□□ -0
USP4-204ENST00000416417 JARID2Q92833 1246 aaPredicted RBP15.04■□□□□ -0
USP4-204ENST00000416417 TRAF5O00463 557 aa15.03■□□□□ -0
USP4-204ENST00000416417 HOXB7P09629 217 aa15.03■□□□□ -0
USP4-204ENST00000416417 CELF1Q92879 486 aaKnown RBP15.03■□□□□ -0
USP4-204ENST00000416417 RTFDC1Q9BY42 306 aaPredicted RBP15.03■□□□□ -0
USP4-204ENST00000416417 SHTN1A0MZ66 631 aa15.02■□□□□ -0
USP4-204ENST00000416417 FOXN1O15353 648 aa15.02■□□□□ -0
USP4-204ENST00000416417 GMPSP49915 693 aaPredicted RBP15.02■□□□□ -0
USP4-204ENST00000416417 C8orf58Q8NAV2 365 aa15.02■□□□□ -0
USP4-204ENST00000416417 SUPT20HQ8NEM7 779 aa15.02■□□□□ -0
USP4-204ENST00000416417 HYPKQ9NX55 129 aa15.02■□□□□ -0
USP4-204ENST00000416417 ZNRF3Q9ULT6 936 aa15.02■□□□□ -0
USP4-204ENST00000416417 DDX60Q8IY21 1712 aaKnown RBP15.02■□□□□ -0
USP4-204ENST00000416417 RIC3Q7Z5B4 369 aa15.02□□□□□ -0.01
USP4-204ENST00000416417 GPR101Q96P66 508 aaPredicted RBP15.02□□□□□ -0.01
USP4-204ENST00000416417 GPRC5DQ9NZD1 345 aa15.02□□□□□ -0.01
USP4-204ENST00000416417 ABT1Q9ULW3 272 aaKnown RBP15.02□□□□□ -0.01
USP4-204ENST00000416417 YDJCA8MPS7 323 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 RIMBP2O15034 1052 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 KIAA2012Q0VF49 1180 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 MYD88Q99836 296 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 IFT57Q9NWB7 429 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 DUOX1Q9NRD9 1551 aa15.01□□□□□ -0.01
USP4-204ENST00000416417 IRS4O14654 1257 aaPredicted RBP15□□□□□ -0.01
USP4-204ENST00000416417 GNAI1P63096 354 aa15□□□□□ -0.01
USP4-204ENST00000416417 GRM1Q13255 1194 aa15□□□□□ -0.01
USP4-204ENST00000416417 DEFB115Q30KQ5 88 aa15□□□□□ -0.01
USP4-204ENST00000416417 CIAPIN1Q6FI81 312 aa15□□□□□ -0.01
USP4-204ENST00000416417 TSPYL6Q8N831 410 aa15□□□□□ -0.01
USP4-204ENST00000416417 GPSM2P81274 684 aa14.99□□□□□ -0.01
USP4-204ENST00000416417 GOLGA2Q08379 1002 aa14.99□□□□□ -0.01
USP4-204ENST00000416417 SF3B3Q15393 1217 aaKnown RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 USP50Q70EL3 339 aaPredicted RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 TSR2Q969E8 191 aaKnown RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 CCDC85AQ96PX6 553 aaPredicted RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 DBNDD1Q9H9R9 158 aa14.99□□□□□ -0.01
USP4-204ENST00000416417 SEC31BQ9NQW1 1179 aa14.99□□□□□ -0.01
USP4-204ENST00000416417 ADARB2Q9NS39 739 aaKnown RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 NSFL1CQ9UNZ2 370 aaKnown RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 ZBTB12Q9Y330 459 aaPredicted RBP14.99□□□□□ -0.01
USP4-204ENST00000416417 CST9Q5W186 159 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 PAXIP1Q6ZW49 1069 aaPredicted RBP14.98□□□□□ -0.01
USP4-204ENST00000416417 TRPM4Q8TD43 1214 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 BCL2L13Q9BXK5 485 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 VPS33BQ9H267 617 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 KCNQ5Q9NR82 932 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 POLLQ9UGP5 575 aa14.98□□□□□ -0.01
USP4-204ENST00000416417 RASSF10A6NK89 507 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 C6orf229H3BNL8 230 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 HIRAP54198 1017 aaPredicted RBP14.97□□□□□ -0.01
USP4-204ENST00000416417 DOK7Q18PE1 504 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 DLK2Q6UY11 383 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 GLIS2Q9BZE0 524 aaPredicted RBP14.97□□□□□ -0.01
USP4-204ENST00000416417 TRIM28Q13263 835 aaKnown RBP14.97□□□□□ -0.01
USP4-204ENST00000416417 WASHC4Q2M389 1173 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 CYP4F22Q6NT55 531 aa14.97□□□□□ -0.01
USP4-204ENST00000416417 WDR33Q9C0J8 1336 aaKnown RBP14.96□□□□□ -0.01
USP4-204ENST00000416417 PSMD14O00487 310 aa14.96□□□□□ -0.02
USP4-204ENST00000416417 CALD1Q05682 793 aaKnown RBP14.96□□□□□ -0.02
USP4-204ENST00000416417 TNIP1Q15025 636 aa14.96□□□□□ -0.02
USP4-204ENST00000416417 ZBTB38Q8NAP3 1195 aaPredicted RBP14.96□□□□□ -0.02
USP4-204ENST00000416417 ZNF408Q9H9D4 720 aa14.96□□□□□ -0.02
USP4-204ENST00000416417 CNOT7Q9UIV1 285 aaKnown RBP14.96□□□□□ -0.02
USP4-204ENST00000416417 LRRC37AA6NMS7 1700 aa14.95□□□□□ -0.02
USP4-204ENST00000416417 RPS8P62241 208 aaKnown RBP14.95□□□□□ -0.02
USP4-204ENST00000416417 TMC4Q7Z404 712 aa14.95□□□□□ -0.02
USP4-204ENST00000416417 MICALL2Q8IY33 904 aa14.95□□□□□ -0.02
USP4-204ENST00000416417 AIDAQ96BJ3 306 aa14.95□□□□□ -0.02
USP4-204ENST00000416417 WBP1LQ9NX94 342 aa14.95□□□□□ -0.02
USP4-204ENST00000416417 EGFRP00533 1210 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 LBX1P52954 281 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 SAMD7Q7Z3H4 446 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 TBC1D16Q8TBP0 767 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 CAPNS2Q96L46 248 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 MAP3K2Q9Y2U5 619 aa14.94□□□□□ -0.02
USP4-204ENST00000416417 ECE2O60344 883 aa14.93□□□□□ -0.02
USP4-204ENST00000416417 AOC2O75106 756 aa14.93□□□□□ -0.02
USP4-204ENST00000416417 CELF2O95319 508 aaKnown RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 PCCAP05165 728 aaPredicted RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 TBC1D10BQ4KMP7 808 aaPredicted RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 RBM26Q5T8P6 1007 aaKnown RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 CCDC30Q5VVM6 783 aa14.93□□□□□ -0.02
USP4-204ENST00000416417 G2E3Q7L622 706 aa14.93□□□□□ -0.02
USP4-204ENST00000416417 METTL22Q9BUU2 404 aaPredicted RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 CWC25Q9NXE8 425 aaPredicted RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 SALL2Q9Y467 1007 aaPredicted RBP14.93□□□□□ -0.02
USP4-204ENST00000416417 WTIPA6NIX2 430 aaPredicted RBP14.92□□□□□ -0.02
USP4-204ENST00000416417 CTCFP49711 727 aaPredicted RBP14.92□□□□□ -0.02
USP4-204ENST00000416417 CCDC191Q8NCU4 936 aa14.92□□□□□ -0.02
USP4-204ENST00000416417 RTL9Q8NET4 1388 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms