RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 LARP6Q9BRS8 491 aaKnown RBP10.77□□□□□ -0.68
LIG4-202ENST00000405925 TTC41PQ6P2S7 1318 aa10.77□□□□□ -0.68
LIG4-202ENST00000405925 KDRP35968 1356 aa10.77□□□□□ -0.68
LIG4-202ENST00000405925 SLIT1O75093 1534 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 HEG1Q9ULI3 1381 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 SOS2Q07890 1332 aaPredicted RBP10.77□□□□□ -0.69
LIG4-202ENST00000405925 HSPA1LP34931 641 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 BAG6P46379 1132 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 NFKBIBQ15653 356 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 ZC3H12CQ9C0D7 883 aaKnown RBP10.77□□□□□ -0.69
LIG4-202ENST00000405925 MKNK2Q9HBH9 465 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 BRMS1Q9HCU9 246 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 FIBPO43427 364 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 LDHCP07864 332 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 PAG1Q9NWQ8 432 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 JAG2Q9Y219 1238 aa10.77□□□□□ -0.69
LIG4-202ENST00000405925 LRRC7Q96NW7 1537 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 RANBP6O60518 1105 aaKnown RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 LARP1BQ659C4 914 aaKnown RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 CREBRFQ8IUR6 639 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 DDX11Q96FC9 970 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 ESYT1Q9BSJ8 1104 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 MAP3K15Q6ZN16 1313 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 CYP7A1P22680 504 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 IL6STP40189 918 aaPredicted RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 ZSCAN31Q96LW9 406 aaPredicted RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 F8W031 263 aaPredicted RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 ZFYP08048 801 aaPredicted RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 SLC4A8Q2Y0W8 1093 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 CCDC83Q8IWF9 413 aa10.76□□□□□ -0.69
LIG4-202ENST00000405925 CRACR2BQ8N4Y2 399 aaPredicted RBP10.76□□□□□ -0.69
LIG4-202ENST00000405925 POLD1P28340 1107 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 CEBPZQ03701 1054 aaKnown RBP10.75□□□□□ -0.69
LIG4-202ENST00000405925 TNNI3KQ59H18 835 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 USPL1Q5W0Q7 1092 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 GIGYF2Q6Y7W6 1299 aaKnown RBP10.75□□□□□ -0.69
LIG4-202ENST00000405925 FPGT-TNNI3KV9GXZ4 949 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 TAF5LO75529 589 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 SPTY2D1Q68D10 685 aaPredicted RBP10.75□□□□□ -0.69
LIG4-202ENST00000405925 SLF2Q8IX21 1173 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 PIBF1Q8WXW3 757 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 TBC1D32Q96NH3 1257 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 CCDC73Q6ZRK6 1079 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 CWC22Q9HCG8 908 aaKnown RBP10.75□□□□□ -0.69
LIG4-202ENST00000405925 KDM2BQ8NHM5 1336 aa10.75□□□□□ -0.69
LIG4-202ENST00000405925 BAG3O95817 575 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 C8orf34Q49A92 452 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 MSL1Q68DK7 614 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 SSH3Q8TE77 659 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 CRB1P82279 1406 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 RIMBP2O15034 1052 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 NMIQ13287 307 aaPredicted RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 NAA16Q6N069 864 aaPredicted RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 TCEANC2Q96MN5 208 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 TCEAL9Q9UHQ7 104 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 PALLDQ8WX93 1383 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 MPHOSPH10O00566 681 aaKnown RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 BRPF1P55201 1214 aaPredicted RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 TPM4P67936 248 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 MCMDC2Q4G0Z9 681 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 ZBTB38Q8NAP3 1195 aaPredicted RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 TBC1D2Q9BYX2 928 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 ZNF287Q9HBT7 754 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 RBM8AQ9Y5S9 174 aaKnown RBP10.74□□□□□ -0.69
LIG4-202ENST00000405925 NCAPD2Q15021 1401 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 IQCA1Q86XH1 822 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 CCDC82Q8N4S0 544 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 ANKRD2Q9GZV1 360 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 ATG3Q9NT62 314 aa10.74□□□□□ -0.69
LIG4-202ENST00000405925 MST1RQ04912 1400 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 ZNF804AQ7Z570 1209 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 RNF41Q9H4P4 317 aaPredicted RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 NDUFB9Q9Y6M9 179 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 WDR33Q9C0J8 1336 aaKnown RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 IFIT3O14879 490 aaKnown RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 PCCAP05165 728 aaPredicted RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 CTSWP56202 376 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 PUM3Q15397 648 aaKnown RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 ZNF444Q8N0Y2 327 aaPredicted RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 BECN2A8MW95 431 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 KCNQ2O43526 872 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 HMGB1P09429 215 aaKnown RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 FERMT3Q86UX7 667 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 XAGE2Q96GT9 111 aa10.73□□□□□ -0.69
LIG4-202ENST00000405925 GJD4Q96KN9 370 aaPredicted RBP10.73□□□□□ -0.69
LIG4-202ENST00000405925 PRPF40AO75400 957 aaKnown RBP10.72□□□□□ -0.69
LIG4-202ENST00000405925 CDKL5O76039 1030 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 UFL1O94874 794 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 MIGA1Q8NAN2 632 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.72□□□□□ -0.69
LIG4-202ENST00000405925 CHMLP26374 656 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 RBM17Q96I25 401 aaKnown RBP10.72□□□□□ -0.69
LIG4-202ENST00000405925 NEK1Q96PY6 1258 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 DCCP43146 1447 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 NCOA3Q9Y6Q9 1424 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 ZGPATQ8N5A5 531 aaKnown RBP10.72□□□□□ -0.69
LIG4-202ENST00000405925 CRNKL1Q9BZJ0 848 aaKnown RBP10.72□□□□□ -0.69
LIG4-202ENST00000405925 LIMCH1Q9UPQ0 1083 aa10.72□□□□□ -0.69
LIG4-202ENST00000405925 SLC4A4Q9Y6R1 1079 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms