RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 SPTLC3Q9NUV7 552 aa12.74□□□□□ -0.37
CLIP4-204ENST00000404424 TATP17735 454 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 FAM13BQ9NYF5 915 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 SCN11AQ9UI33 1791 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 GOLGA6L4A6NEF3 574 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 SNRPA1P09661 255 aaKnown RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 MYL6BP14649 208 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 PHKG2P15735 406 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 RFX5P48382 616 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 SLC39A6Q13433 755 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 RABL6Q3YEC7 729 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 TNNI3KQ59H18 835 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 EPHA10Q5JZY3 1008 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 MYRIPQ8NFW9 859 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 KLHDC4Q8TBB5 520 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 TTC12Q9H892 705 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 DDX19AQ9NUU7 478 aaKnown RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 U3KPZ7 1027 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 FPGT-TNNI3KV9GXZ4 949 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 ABCC6O95255 1503 aa12.73□□□□□ -0.37
CLIP4-204ENST00000404424 KDM6AO15550 1401 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-204ENST00000404424 RBM10P98175 930 aaKnown RBP12.72□□□□□ -0.37
CLIP4-204ENST00000404424 PTPN12Q05209 780 aaKnown RBP12.72□□□□□ -0.37
CLIP4-204ENST00000404424 TICAM2Q86XR7 235 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 SPATA32Q96LK8 384 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 ZNF830Q96NB3 372 aaPredicted RBP12.72□□□□□ -0.37
CLIP4-204ENST00000404424 NEK1Q96PY6 1258 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 C5P01031 1676 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 KIF1AQ12756 1690 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 FERMT3Q86UX7 667 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 IFNL2Q8IZJ0 200 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 NFATC2IPQ8NCF5 419 aa12.72□□□□□ -0.37
CLIP4-204ENST00000404424 DBNLQ9UJU6 430 aaKnown RBP12.72□□□□□ -0.37
CLIP4-204ENST00000404424 PLCB2Q00722 1185 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 GTF3C6Q969F1 213 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 TYRO3Q06418 890 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 COL9A3Q14050 684 aaPredicted RBP12.71□□□□□ -0.37
CLIP4-204ENST00000404424 MCMDC2Q4G0Z9 681 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.37
CLIP4-204ENST00000404424 TTC5Q8N0Z6 440 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 ZNF496Q96IT1 587 aaPredicted RBP12.71□□□□□ -0.37
CLIP4-204ENST00000404424 TCEANC2Q96MN5 208 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 TNMDQ9H2S6 317 aa12.71□□□□□ -0.37
CLIP4-204ENST00000404424 ZSCAN16Q9H4T2 348 aaPredicted RBP12.71□□□□□ -0.37
CLIP4-204ENST00000404424 LIG1P18858 919 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 GTF2F1P35269 517 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLIP4-204ENST00000404424 TFCP2Q12800 502 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 LEO1Q8WVC0 666 aaPredicted RBP12.7□□□□□ -0.38
CLIP4-204ENST00000404424 HAUS7Q99871 368 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 MRVI1Q9Y6F6 885 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 TAF6LQ9Y6J9 622 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 RGPD5Q99666 1765 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 AP5Z1O43299 807 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 DTNBO60941 627 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 HMGB1P09429 215 aaKnown RBP12.7□□□□□ -0.38
CLIP4-204ENST00000404424 DCAF5Q96JK2 942 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 FMNL2Q96PY5 1086 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 NLRP2Q9NX02 1062 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 DACT1Q9NYF0 836 aa12.7□□□□□ -0.38
CLIP4-204ENST00000404424 STK3Q13188 491 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 FAM173BQ6P4H8 233 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 MPNDQ8N594 471 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 KIAA1524Q8TCG1 905 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 EDC3Q96F86 508 aaKnown RBP12.69□□□□□ -0.38
CLIP4-204ENST00000404424 LLPHQ9BRT6 129 aaKnown RBP12.69□□□□□ -0.38
CLIP4-204ENST00000404424 CLSTN2Q9H4D0 955 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 USP16Q9Y5T5 823 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 C1orf167Q5SNV9 1468 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 CAVIN2O95810 425 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 ZC3H6P61129 1189 aaKnown RBP12.69□□□□□ -0.38
CLIP4-204ENST00000404424 CFAP45Q9UL16 551 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 SH3TC1Q8TE82 1336 aa12.69□□□□□ -0.38
CLIP4-204ENST00000404424 ZNF609O15014 1411 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 Q6ZUG5 572 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 UBE3BQ7Z3V4 1068 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 A0A087WZG4 1122 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 CYP21A2P08686 494 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 RESTQ13127 1097 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 CAMK4Q16566 473 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 KBTBD3Q8NAB2 608 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 PLBD2Q8NHP8 589 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 SMARCC2Q8TAQ2 1214 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 TFIP11Q9UBB9 837 aaKnown RBP12.68□□□□□ -0.38
CLIP4-204ENST00000404424 ALS2Q96Q42 1657 aa12.68□□□□□ -0.38
CLIP4-204ENST00000404424 H3BQV1 296 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 CASP7P55210 303 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 IFFO2Q5TF58 517 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 BRF1Q92994 677 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 DNAJC2Q99543 621 aaKnown RBP12.67□□□□□ -0.38
CLIP4-204ENST00000404424 DBNDD2Q9BQY9 259 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 KCNF1Q9H3M0 494 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 GPR108Q9NPR9 543 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 HELLSQ9NRZ9 838 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 CHMP3Q9Y3E7 222 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 KIF3AQ9Y496 699 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 PALLDQ8WX93 1383 aa12.67□□□□□ -0.38
CLIP4-204ENST00000404424 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
CLIP4-204ENST00000404424 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms