RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 USP17L24Q0WX57 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 TMCO4Q5TGY1 634 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 RAB44Q7Z6P3 723 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-204ENST00000399489 MICALL1Q8N3F8 863 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 EIF5BO60841 1220 aaKnown RBP6.53□□□□□ -1.36
HMGB1-204ENST00000399489 LILRB5O75023 590 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 PCSK7Q16549 785 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 AEBP1Q8IUX7 1158 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 ZNF428Q96B54 188 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 MDFIQ99750 246 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 IGFLR1Q9H665 355 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 TGFBR3LH3BV60 316 aa6.52□□□□□ -1.37
HMGB1-204ENST00000399489 HYAL3O43820 417 aaPredicted RBP6.52□□□□□ -1.37
HMGB1-204ENST00000399489 ALBP02768 609 aa6.52□□□□□ -1.37
HMGB1-204ENST00000399489 PTK7Q13308 1070 aa6.52□□□□□ -1.37
HMGB1-204ENST00000399489 TRAPPC3LQ5T215 181 aa6.52□□□□□ -1.37
HMGB1-204ENST00000399489 HMGB1P09429 215 aaKnown RBP6.51□□□□□ -1.37
HMGB1-204ENST00000399489 MFAP1P55081 439 aaKnown RBP6.51□□□□□ -1.37
HMGB1-204ENST00000399489 CCINQ13939 588 aa6.51□□□□□ -1.37
HMGB1-204ENST00000399489 FOXO3O43524 673 aa6.5□□□□□ -1.37
HMGB1-204ENST00000399489 ARID4AP29374 1257 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 RBM25P49756 843 aaKnown RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 RAC1P63000 192 aa6.5□□□□□ -1.37
HMGB1-204ENST00000399489 CRTC2Q53ET0 693 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 KANK4Q5T7N3 995 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 STARD13Q9Y3M8 1113 aa6.5□□□□□ -1.37
HMGB1-204ENST00000399489 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 CDK11BP21127 795 aaKnown RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 RSPO4Q2I0M5 234 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 FAM200AQ8TCP9 573 aa6.5□□□□□ -1.37
HMGB1-204ENST00000399489 FOXD4L4Q8WXT5 416 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 SLC6A14Q9UN76 642 aa6.5□□□□□ -1.37
HMGB1-204ENST00000399489 CDK11AQ9UQ88 783 aaPredicted RBP6.5□□□□□ -1.37
HMGB1-204ENST00000399489 C9orf172C9J069 976 aa6.49□□□□□ -1.37
HMGB1-204ENST00000399489 HSP90B1P14625 803 aaKnown RBP6.49□□□□□ -1.37
HMGB1-204ENST00000399489 RFX1P22670 979 aa6.49□□□□□ -1.37
HMGB1-204ENST00000399489 JPH1Q9HDC5 661 aaPredicted RBP6.49□□□□□ -1.37
HMGB1-204ENST00000399489 ARSDP51689 593 aa6.48□□□□□ -1.37
HMGB1-204ENST00000399489 DNAJB12Q9NXW2 375 aaKnown RBP6.48□□□□□ -1.37
HMGB1-204ENST00000399489 FAM229AH3BQW9 127 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 RGS9O75916 674 aaPredicted RBP6.47□□□□□ -1.37
HMGB1-204ENST00000399489 NID1P14543 1247 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 NFKB1P19838 968 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 C8orf86Q6ZUL3 223 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 GSX2Q9BZM3 304 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 C11orf16Q9NQ32 467 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 IDH3AP50213 366 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 DGKZQ13574 1117 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 C11orf91Q3C1V1 193 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 C20orf204Q6ZNR8 217 aa6.47□□□□□ -1.37
HMGB1-204ENST00000399489 LGR5O75473 907 aa6.46□□□□□ -1.38
HMGB1-204ENST00000399489 PSAPL1Q6NUJ1 521 aa6.46□□□□□ -1.38
HMGB1-204ENST00000399489 RETREG2Q8NC44 543 aa6.46□□□□□ -1.38
HMGB1-204ENST00000399489 NUDT8Q8WV74 236 aa6.46□□□□□ -1.38
HMGB1-204ENST00000399489 GZF1Q9H116 711 aaPredicted RBP6.46□□□□□ -1.38
HMGB1-204ENST00000399489 ELNP15502 786 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 NRG1Q02297 640 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-204ENST00000399489 NKAPLQ5M9Q1 402 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 KLK14Q9P0G3 267 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 ZNF777Q9ULD5 760 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-204ENST00000399489 MICAL2O94851 1124 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 MAP3K6O95382 1288 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 WEE1P30291 646 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 COL9A3Q14050 684 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-204ENST00000399489 FAM35AQ86V20 835 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 MYO19Q96H55 970 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 PUS7Q96PZ0 661 aaKnown RBP6.45□□□□□ -1.38
HMGB1-204ENST00000399489 SERPINA10Q9UK55 444 aa6.45□□□□□ -1.38
HMGB1-204ENST00000399489 A0A0A0MRY4 1105 aa6.44□□□□□ -1.38
HMGB1-204ENST00000399489 RARAP10276 462 aa6.44□□□□□ -1.38
HMGB1-204ENST00000399489 INPP5BP32019 993 aa6.44□□□□□ -1.38
HMGB1-204ENST00000399489 GRIK4Q16099 956 aa6.44□□□□□ -1.38
HMGB1-204ENST00000399489 DMGDHQ9UI17 866 aaKnown RBP6.44□□□□□ -1.38
HMGB1-204ENST00000399489 ELMSAN1Q6PJG2 1045 aa6.43□□□□□ -1.38
HMGB1-204ENST00000399489 KRT25Q7Z3Z0 450 aa6.43□□□□□ -1.38
HMGB1-204ENST00000399489 CCDC97Q96F63 343 aaPredicted RBP6.43□□□□□ -1.38
HMGB1-204ENST00000399489 FRRS1LQ9P0K9 344 aa6.43□□□□□ -1.38
HMGB1-204ENST00000399489 NOVA2Q9UNW9 492 aaKnown RBP6.43□□□□□ -1.38
HMGB1-204ENST00000399489 BCS1LQ9Y276 419 aa6.43□□□□□ -1.38
HMGB1-204ENST00000399489 E9PSI1 815 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 CPB1P15086 417 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 CDCA8Q53HL2 280 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 CFAP70Q5T0N1 1121 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 DHX32Q7L7V1 743 aaKnown RBP6.42□□□□□ -1.38
HMGB1-204ENST00000399489 IFT43Q96FT9 208 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 QTRT2Q9H974 415 aaKnown RBP6.42□□□□□ -1.38
HMGB1-204ENST00000399489 TPSG1Q9NRR2 321 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 USP21Q9UK80 565 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 AFF1P51825 1210 aaKnown RBP6.42□□□□□ -1.38
HMGB1-204ENST00000399489 SWI5Q1ZZU3 235 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 WFDC8Q8IUA0 241 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 DMRTC2Q8IXT2 367 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-204ENST00000399489 DTWD1Q8N5C7 304 aa6.42□□□□□ -1.38
HMGB1-204ENST00000399489 GPLD1P80108 840 aa6.41□□□□□ -1.38
HMGB1-204ENST00000399489 ADGRE1Q14246 886 aa6.41□□□□□ -1.38
HMGB1-204ENST00000399489 TXNRD3Q86VQ6 643 aa6.41□□□□□ -1.38
HMGB1-204ENST00000399489 LENG1Q96BZ8 264 aaPredicted RBP6.41□□□□□ -1.38
HMGB1-204ENST00000399489 RBSNQ9H1K0 784 aa6.41□□□□□ -1.38
HMGB1-204ENST00000399489 FAM13BQ9NYF5 915 aa6.41□□□□□ -1.38
HMGB1-204ENST00000399489 ACIN1Q9UKV3 1341 aaKnown RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms