RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 MCM2P49736 904 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 NUCB2P80303 420 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 TRIM28Q13263 835 aaKnown RBP18.17■□□□□ 0.5
GPC3-202ENST00000394299 CCDC57Q2TAC2 916 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 NLRP10Q86W26 655 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 MAP4K1Q92918 833 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 JAKMIP1Q96N16 626 aaKnown RBP18.17■□□□□ 0.5
GPC3-202ENST00000394299 PCCAP05165 728 aaPredicted RBP18.16■□□□□ 0.5
GPC3-202ENST00000394299 IL15P40933 162 aaPredicted RBP18.16■□□□□ 0.5
GPC3-202ENST00000394299 KCNJ4P48050 445 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 ZBTB38Q8NAP3 1195 aaPredicted RBP18.16■□□□□ 0.5
GPC3-202ENST00000394299 KCNQ2O43526 872 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 CREB3L3Q68CJ9 461 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 MCTP1Q6DN14 999 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 RUFY3Q7L099 469 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 HAUS7Q99871 368 aa18.16■□□□□ 0.5
GPC3-202ENST00000394299 A0A1B0GUL7 405 aa18.15■□□□□ 0.5
GPC3-202ENST00000394299 PHLPP1O60346 1717 aa18.15■□□□□ 0.5
GPC3-202ENST00000394299 HIP1O00291 1037 aa18.15■□□□□ 0.5
GPC3-202ENST00000394299 DZIP3Q86Y13 1208 aaKnown RBP18.15■□□□□ 0.5
GPC3-202ENST00000394299 FAM177BA6PVY3 158 aa18.14■□□□□ 0.49
GPC3-202ENST00000394299 GOLIM4O00461 696 aa18.14■□□□□ 0.49
GPC3-202ENST00000394299 LARGE1O95461 756 aa18.14■□□□□ 0.49
GPC3-202ENST00000394299 SPATA31A5Q5VU36 1347 aa18.14■□□□□ 0.49
GPC3-202ENST00000394299 SPATA31A7Q8IWB4 1347 aa18.14■□□□□ 0.49
GPC3-202ENST00000394299 ADORA1P30542 326 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 ATP6V1AP38606 617 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 TCEANC2Q96MN5 208 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 BRPF3Q9ULD4 1205 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 SLC27A2O14975 620 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 TAF5LO75529 589 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 CSF1RP07333 972 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 GREM2Q9H772 168 aa18.13■□□□□ 0.49
GPC3-202ENST00000394299 TRMT112Q9UI30 125 aaKnown RBP18.13■□□□□ 0.49
GPC3-202ENST00000394299 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.13■□□□□ 0.49
GPC3-202ENST00000394299 TOM1O60784 492 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 KCNQ4P56696 695 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 INTS5Q6P9B9 1019 aaKnown RBP18.12■□□□□ 0.49
GPC3-202ENST00000394299 CLEC17AQ6ZS10 378 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 CEP126Q9P2H0 1117 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 MED23Q9ULK4 1368 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 PLCH1Q4KWH8 1693 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 ITPK1Q13572 414 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 FAM98CQ17RN3 349 aaKnown RBP18.12■□□□□ 0.49
GPC3-202ENST00000394299 FOXD4L6Q3SYB3 417 aaPredicted RBP18.12■□□□□ 0.49
GPC3-202ENST00000394299 TAF7LQ5H9L4 462 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 FOXD4L3Q6VB84 417 aaPredicted RBP18.12■□□□□ 0.49
GPC3-202ENST00000394299 TTLL11Q8NHH1 800 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 KCNB2Q92953 911 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 SNRKQ9NRH2 765 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 THRAP3Q9Y2W1 955 aaKnown RBP18.12■□□□□ 0.49
GPC3-202ENST00000394299 UBN2Q6ZU65 1347 aa18.12■□□□□ 0.49
GPC3-202ENST00000394299 IFIT5Q13325 482 aaKnown RBP18.11■□□□□ 0.49
GPC3-202ENST00000394299 ZSWIM6Q9HCJ5 1215 aa18.11■□□□□ 0.49
GPC3-202ENST00000394299 PDRG1Q9NUG6 133 aa18.11■□□□□ 0.49
GPC3-202ENST00000394299 ZNF609O15014 1411 aa18.11■□□□□ 0.49
GPC3-202ENST00000394299 IRS4O14654 1257 aaPredicted RBP18.11■□□□□ 0.49
GPC3-202ENST00000394299 CIAO1O76071 339 aa18.11■□□□□ 0.49
GPC3-202ENST00000394299 IL6STP40189 918 aaPredicted RBP18.11■□□□□ 0.49
GPC3-202ENST00000394299 CDCA7Q9BWT1 371 aaPredicted RBP18.11■□□□□ 0.49
GPC3-202ENST00000394299 PAG1Q9NWQ8 432 aa18.11■□□□□ 0.49
GPC3-202ENST00000394299 LOC102724428A0A0B4J2F2 783 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 ITGA6P23229 1130 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 CRKLP46109 303 aaKnown RBP18.1■□□□□ 0.49
GPC3-202ENST00000394299 SIK1P57059 783 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 INTS4Q96HW7 963 aaKnown RBP18.1■□□□□ 0.49
GPC3-202ENST00000394299 C8orf37Q96NL8 207 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 PLA2G12BQ9BX93 195 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 GPR108Q9NPR9 543 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 LIMCH1Q9UPQ0 1083 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 IFIT1P09914 478 aaKnown RBP18.1■□□□□ 0.49
GPC3-202ENST00000394299 ZKSCAN1P17029 563 aaPredicted RBP18.1■□□□□ 0.49
GPC3-202ENST00000394299 KBTBD3Q8NAB2 608 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 CYP46A1Q9Y6A2 500 aa18.1■□□□□ 0.49
GPC3-202ENST00000394299 DOT1LQ8TEK3 1739 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 UBAP1LF5GYI3 381 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 EIF5P55010 431 aaKnown RBP18.09■□□□□ 0.49
GPC3-202ENST00000394299 PTF1AQ7RTS3 328 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 XAGE2Q96GT9 111 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 FKBP4Q02790 459 aaKnown RBP eCLIP18.09■□□□□ 0.49
GPC3-202ENST00000394299 SCARF1Q14162 830 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 SMIM5Q71RC9 77 aa18.09■□□□□ 0.49
GPC3-202ENST00000394299 PRPF40AO75400 957 aaKnown RBP18.08■□□□□ 0.48
GPC3-202ENST00000394299 BRD1O95696 1058 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 VPS53Q5VIR6 699 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 PI16Q6UXB8 463 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 LDHAL6AQ6ZMR3 332 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 LMBRD1Q9NUN5 540 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 CCDC87Q9NVE4 849 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 LRP6O75581 1613 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 HCLS1P14317 486 aaPredicted RBP18.08■□□□□ 0.48
GPC3-202ENST00000394299 CTSWP56202 376 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 MCMDC2Q4G0Z9 681 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 HSP90AB3PQ58FF7 597 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 SUSD4Q5VX71 490 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 CCDC83Q8IWF9 413 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 ZNF34Q8IZ26 560 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 NECAB1Q8N987 351 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 NGLY1Q96IV0 654 aa18.08■□□□□ 0.48
GPC3-202ENST00000394299 GOLGA6L22H0YM25 854 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms