RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 LSG1Q9H089 658 aaKnown RBP30.51■■■□□ 2.48
SHOX2-201ENST00000389589 ZNF594Q96JF6 807 aaPredicted RBP30.5■■■□□ 2.47
SHOX2-201ENST00000389589 DBNDD2Q9BQY9 259 aa30.5■■■□□ 2.47
SHOX2-201ENST00000389589 IFIT5Q13325 482 aaKnown RBP30.5■■■□□ 2.47
SHOX2-201ENST00000389589 TRMT112Q9UI30 125 aaKnown RBP30.5■■■□□ 2.47
SHOX2-201ENST00000389589 LRRC24Q50LG9 513 aa30.49■■■□□ 2.47
SHOX2-201ENST00000389589 FSD1Q9BTV5 496 aa30.49■■■□□ 2.47
SHOX2-201ENST00000389589 PALD1Q9ULE6 856 aa30.48■■■□□ 2.47
SHOX2-201ENST00000389589 ZNF609O15014 1411 aa30.48■■■□□ 2.47
SHOX2-201ENST00000389589 FRAT2O75474 233 aaPredicted RBP30.48■■■□□ 2.47
SHOX2-201ENST00000389589 MCM2P49736 904 aa30.48■■■□□ 2.47
SHOX2-201ENST00000389589 RFX7Q2KHR2 1363 aa30.48■■■□□ 2.47
SHOX2-201ENST00000389589 CEP126Q9P2H0 1117 aa30.47■■■□□ 2.47
SHOX2-201ENST00000389589 IRS4O14654 1257 aaPredicted RBP30.46■■■□□ 2.47
SHOX2-201ENST00000389589 TAF7LQ5H9L4 462 aa30.46■■■□□ 2.47
SHOX2-201ENST00000389589 AK7Q96M32 723 aa30.46■■■□□ 2.47
SHOX2-201ENST00000389589 CTSWP56202 376 aa30.46■■■□□ 2.47
SHOX2-201ENST00000389589 HAUS7Q99871 368 aa30.46■■■□□ 2.47
SHOX2-201ENST00000389589 SNRKQ9NRH2 765 aa30.46■■■□□ 2.47
SHOX2-201ENST00000389589 PDE8AO60658 829 aa30.45■■■□□ 2.47
SHOX2-201ENST00000389589 NEK4P51957 841 aa30.45■■■□□ 2.47
SHOX2-201ENST00000389589 TTLL11Q8NHH1 800 aa30.45■■■□□ 2.47
SHOX2-201ENST00000389589 NEUROD6Q96NK8 337 aa30.45■■■□□ 2.47
SHOX2-201ENST00000389589 UBN2Q6ZU65 1347 aa30.45■■■□□ 2.47
SHOX2-201ENST00000389589 NHSQ6T4R5 1651 aa30.45■■■□□ 2.46
SHOX2-201ENST00000389589 MEX3CQ5U5Q3 659 aaKnown RBP30.45■■■□□ 2.46
SHOX2-201ENST00000389589 AKAP2Q9Y2D5 859 aa30.45■■■□□ 2.46
SHOX2-201ENST00000389589 BCORQ6W2J9 1755 aa30.44■■■□□ 2.46
SHOX2-201ENST00000389589 PUS3Q9BZE2 481 aaKnown RBP30.44■■■□□ 2.46
SHOX2-201ENST00000389589 BTAF1O14981 1849 aa30.44■■■□□ 2.46
SHOX2-201ENST00000389589 CAMTA2O94983 1202 aa30.43■■■□□ 2.46
SHOX2-201ENST00000389589 NMIQ13287 307 aaPredicted RBP30.43■■■□□ 2.46
SHOX2-201ENST00000389589 PARP10Q53GL7 1025 aa30.43■■■□□ 2.46
SHOX2-201ENST00000389589 TICAM2Q86XR7 235 aa30.43■■■□□ 2.46
SHOX2-201ENST00000389589 SYNE4Q8N205 404 aa30.43■■■□□ 2.46
SHOX2-201ENST00000389589 SPEF2Q9C093 1822 aa30.42■■■□□ 2.46
SHOX2-201ENST00000389589 ANKRD18BA2A2Z9 1011 aa30.42■■■□□ 2.46
SHOX2-201ENST00000389589 TIMM10P62072 90 aa30.41■■■□□ 2.46
SHOX2-201ENST00000389589 A0A1B0GUL7 405 aa30.4■■■□□ 2.46
SHOX2-201ENST00000389589 ITGA6P23229 1130 aa30.4■■■□□ 2.46
SHOX2-201ENST00000389589 CCDC171Q6TFL3 1326 aa30.4■■■□□ 2.46
SHOX2-201ENST00000389589 FAM227BQ96M60 508 aa30.4■■■□□ 2.46
SHOX2-201ENST00000389589 CCDC85AQ96PX6 553 aaPredicted RBP30.4■■■□□ 2.46
SHOX2-201ENST00000389589 SH3TC1Q8TE82 1336 aa30.39■■■□□ 2.46
SHOX2-201ENST00000389589 PPIL4Q8WUA2 492 aaKnown RBP eCLIP30.39■■■□□ 2.46
SHOX2-201ENST00000389589 GJD4Q96KN9 370 aaPredicted RBP30.39■■■□□ 2.46
SHOX2-201ENST00000389589 GREM2Q9H772 168 aa30.39■■■□□ 2.46
SHOX2-201ENST00000389589 ZNF652Q9Y2D9 606 aa30.39■■■□□ 2.46
SHOX2-201ENST00000389589 HSPA1LP34931 641 aa30.38■■■□□ 2.45
SHOX2-201ENST00000389589 DNAJC2Q99543 621 aaKnown RBP30.38■■■□□ 2.45
SHOX2-201ENST00000389589 UTP14AQ9BVJ6 771 aaKnown RBP30.38■■■□□ 2.45
SHOX2-201ENST00000389589 SNX14Q9Y5W7 946 aa30.38■■■□□ 2.45
SHOX2-201ENST00000389589 LAMB2P55268 1798 aa30.38■■■□□ 2.45
SHOX2-201ENST00000389589 HSP90B1P14625 803 aaKnown RBP30.38■■■□□ 2.45
SHOX2-201ENST00000389589 MED23Q9ULK4 1368 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 CNTNAP4Q9C0A0 1308 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 PTH1RQ03431 593 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 SUSD4Q5VX71 490 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 LINC00116Q8NCU8 138 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 FOXD4L1Q9NU39 408 aa30.37■■■□□ 2.45
SHOX2-201ENST00000389589 A0A0D9SFI3 127 aa30.36■■■□□ 2.45
SHOX2-201ENST00000389589 LDHAL6AQ6ZMR3 332 aa30.36■■■□□ 2.45
SHOX2-201ENST00000389589 KCNB2Q92953 911 aa30.36■■■□□ 2.45
SHOX2-201ENST00000389589 EDC3Q96F86 508 aaKnown RBP30.36■■■□□ 2.45
SHOX2-201ENST00000389589 CWC22Q9HCG8 908 aaKnown RBP30.36■■■□□ 2.45
SHOX2-201ENST00000389589 RIPOR2Q9Y4F9 1068 aa30.36■■■□□ 2.45
SHOX2-201ENST00000389589 RGL2O15211 777 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 CLEC4GQ6UXB4 293 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 KBTBD3Q8NAB2 608 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 DDX60Q8IY21 1712 aaKnown RBP30.35■■■□□ 2.45
SHOX2-201ENST00000389589 SBF2Q86WG5 1849 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 AFF2P51816 1311 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 MAP4K1Q92918 833 aa30.35■■■□□ 2.45
SHOX2-201ENST00000389589 RIC1Q4ADV7 1423 aa30.34■■■□□ 2.45
SHOX2-201ENST00000389589 RAB3GAP1Q15042 981 aa30.34■■■□□ 2.45
SHOX2-201ENST00000389589 CCDC158Q5M9N0 1113 aa30.34■■■□□ 2.45
SHOX2-201ENST00000389589 PAG1Q9NWQ8 432 aa30.34■■■□□ 2.45
SHOX2-201ENST00000389589 ATRNO75882 1429 aa30.33■■■□□ 2.45
SHOX2-201ENST00000389589 IFIT1P09914 478 aaKnown RBP30.33■■■□□ 2.45
SHOX2-201ENST00000389589 NIP7Q9Y221 180 aaKnown RBP eCLIP30.33■■■□□ 2.45
SHOX2-201ENST00000389589 LRP5O75197 1615 aa30.32■■■□□ 2.45
SHOX2-201ENST00000389589 NECTIN1Q15223 517 aa30.32■■■□□ 2.44
SHOX2-201ENST00000389589 METTL24Q5JXM2 366 aa30.32■■■□□ 2.44
SHOX2-201ENST00000389589 RC3H1Q5TC82 1133 aaKnown RBP30.32■■■□□ 2.44
SHOX2-201ENST00000389589 CNNM1Q9NRU3 951 aa30.32■■■□□ 2.44
SHOX2-201ENST00000389589 GORABQ5T7V8 394 aa30.32■■■□□ 2.44
SHOX2-201ENST00000389589 RASEFQ8IZ41 740 aa30.32■■■□□ 2.44
SHOX2-201ENST00000389589 UPF3BQ9BZI7 483 aaKnown RBP30.32■■■□□ 2.44
SHOX2-201ENST00000389589 TRPC5Q9UL62 973 aaPredicted RBP30.32■■■□□ 2.44
SHOX2-201ENST00000389589 ABCC12Q96J65 1359 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 ONECUT3O60422 494 aaPredicted RBP30.31■■■□□ 2.44
SHOX2-201ENST00000389589 DDX46Q7L014 1031 aaKnown RBP30.31■■■□□ 2.44
SHOX2-201ENST00000389589 XAGE2Q96GT9 111 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 TMX3Q96JJ7 454 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 RBM8AQ9Y5S9 174 aaKnown RBP30.31■■■□□ 2.44
SHOX2-201ENST00000389589 LY75O60449 1722 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 ZKSCAN1P17029 563 aaPredicted RBP30.31■■■□□ 2.44
SHOX2-201ENST00000389589 TM6SF1Q9BZW5 370 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 NDUFB9Q9Y6M9 179 aa30.31■■■□□ 2.44
SHOX2-201ENST00000389589 SCN7AQ01118 1682 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms