RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 HCLS1P14317 486 aaPredicted RBP28.5■■■□□ 2.15
SDF4-202ENST00000360001 ATG9AQ7Z3C6 839 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 AOX1Q06278 1338 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 TUBGCP6Q96RT7 1819 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 RGPD3A6NKT7 1758 aaPredicted RBP28.5■■■□□ 2.15
SDF4-202ENST00000360001 RGPD4Q7Z3J3 1758 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 BICDL1Q6ZP65 573 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 GREM2Q9H772 168 aa28.5■■■□□ 2.15
SDF4-202ENST00000360001 SSFA2P28290 1259 aa28.49■■■□□ 2.15
SDF4-202ENST00000360001 IFIT5Q13325 482 aaKnown RBP28.49■■■□□ 2.15
SDF4-202ENST00000360001 SEC24BO95487 1268 aa28.48■■■□□ 2.15
SDF4-202ENST00000360001 EAF2Q96CJ1 260 aaPredicted RBP28.48■■■□□ 2.15
SDF4-202ENST00000360001 EYA2O00167 538 aa28.48■■■□□ 2.15
SDF4-202ENST00000360001 TFCP2Q12800 502 aa28.48■■■□□ 2.15
SDF4-202ENST00000360001 AACSQ86V21 672 aa28.48■■■□□ 2.15
SDF4-202ENST00000360001 CIAO1O76071 339 aa28.47■■■□□ 2.15
SDF4-202ENST00000360001 SETDB2Q96T68 719 aa28.47■■■□□ 2.15
SDF4-202ENST00000360001 SDSP20132 328 aa28.46■■■□□ 2.15
SDF4-202ENST00000360001 ITGA6P23229 1130 aa28.46■■■□□ 2.15
SDF4-202ENST00000360001 LRRC24Q50LG9 513 aa28.46■■■□□ 2.15
SDF4-202ENST00000360001 IFIT2P09913 472 aaKnown RBP28.46■■■□□ 2.15
SDF4-202ENST00000360001 HSP90B1P14625 803 aaKnown RBP28.46■■■□□ 2.15
SDF4-202ENST00000360001 IL15P40933 162 aaPredicted RBP28.46■■■□□ 2.15
SDF4-202ENST00000360001 PUS3Q9BZE2 481 aaKnown RBP28.46■■■□□ 2.15
SDF4-202ENST00000360001 PI4K2BQ8TCG2 481 aa28.45■■■□□ 2.14
SDF4-202ENST00000360001 FBXO3Q9UK99 471 aa28.45■■■□□ 2.14
SDF4-202ENST00000360001 ERFEQ4G0M1 354 aa28.44■■■□□ 2.14
SDF4-202ENST00000360001 ANKRD18BA2A2Z9 1011 aa28.44■■■□□ 2.14
SDF4-202ENST00000360001 ZNF827Q17R98 1081 aa28.44■■■□□ 2.14
SDF4-202ENST00000360001 AKT1S1Q96B36 256 aa28.44■■■□□ 2.14
SDF4-202ENST00000360001 TTC41PQ6P2S7 1318 aa28.43■■■□□ 2.14
SDF4-202ENST00000360001 TAF7LQ5H9L4 462 aa28.43■■■□□ 2.14
SDF4-202ENST00000360001 TNNI3KQ59H18 835 aa28.42■■■□□ 2.14
SDF4-202ENST00000360001 NYXQ9GZU5 481 aa28.42■■■□□ 2.14
SDF4-202ENST00000360001 CCDC8Q9H0W5 538 aaPredicted RBP28.42■■■□□ 2.14
SDF4-202ENST00000360001 FPGT-TNNI3KV9GXZ4 949 aa28.42■■■□□ 2.14
SDF4-202ENST00000360001 TLR7Q9NYK1 1049 aaKnown RBP28.42■■■□□ 2.14
SDF4-202ENST00000360001 CDC45O75419 566 aa28.41■■■□□ 2.14
SDF4-202ENST00000360001 TBC1D9Q6ZT07 1266 aa28.41■■■□□ 2.14
SDF4-202ENST00000360001 ECHDC1Q9NTX5 307 aa28.41■■■□□ 2.14
SDF4-202ENST00000360001 GYS1P13807 737 aa28.41■■■□□ 2.14
SDF4-202ENST00000360001 RTL9Q8NET4 1388 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 ABCC12Q96J65 1359 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 LRP5O75197 1615 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 NFIXQ14938 502 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 SLC10A5Q5PT55 438 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 NBPF5PQ86XG9 351 aaPredicted RBP28.4■■■□□ 2.14
SDF4-202ENST00000360001 GPATCH3Q96I76 525 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 GPR108Q9NPR9 543 aa28.4■■■□□ 2.14
SDF4-202ENST00000360001 CCDC152Q4G0S7 254 aa28.39■■■□□ 2.14
SDF4-202ENST00000360001 CASZ1Q86V15 1759 aa28.39■■■□□ 2.14
SDF4-202ENST00000360001 CARMIL3Q8ND23 1372 aa28.39■■■□□ 2.13
SDF4-202ENST00000360001 TFCP2L1Q9NZI6 479 aa28.39■■■□□ 2.13
SDF4-202ENST00000360001 GTF2E1P29083 439 aaPredicted RBP28.38■■■□□ 2.13
SDF4-202ENST00000360001 RIPOR2Q9Y4F9 1068 aa28.38■■■□□ 2.13
SDF4-202ENST00000360001 GLRX3O76003 335 aaKnown RBP28.37■■■□□ 2.13
SDF4-202ENST00000360001 TPTE2Q6XPS3 522 aa28.37■■■□□ 2.13
SDF4-202ENST00000360001 LDHAL6AQ6ZMR3 332 aa28.37■■■□□ 2.13
SDF4-202ENST00000360001 DBNLQ9UJU6 430 aaKnown RBP28.37■■■□□ 2.13
SDF4-202ENST00000360001 RIC1Q4ADV7 1423 aa28.37■■■□□ 2.13
SDF4-202ENST00000360001 ERC2O15083 957 aa28.37■■■□□ 2.13
SDF4-202ENST00000360001 C3orf67Q6ZVT6 689 aa28.37■■■□□ 2.13
SDF4-202ENST00000360001 CAMKK2Q96RR4 588 aa28.36■■■□□ 2.13
SDF4-202ENST00000360001 CEP126Q9P2H0 1117 aa28.36■■■□□ 2.13
SDF4-202ENST00000360001 ZNF609O15014 1411 aa28.36■■■□□ 2.13
SDF4-202ENST00000360001 SF3B3Q15393 1217 aaKnown RBP28.35■■■□□ 2.13
SDF4-202ENST00000360001 SEC31BQ9NQW1 1179 aa28.35■■■□□ 2.13
SDF4-202ENST00000360001 TRIM6-TRIM34B2RNG4 842 aa28.34■■■□□ 2.13
SDF4-202ENST00000360001 EN1Q05925 392 aaPredicted RBP28.33■■■□□ 2.13
SDF4-202ENST00000360001 EZH2Q15910 746 aaKnown RBP28.33■■■□□ 2.13
SDF4-202ENST00000360001 DBNDD2Q9BQY9 259 aa28.33■■■□□ 2.13
SDF4-202ENST00000360001 CNNM1Q9NRU3 951 aa28.33■■■□□ 2.13
SDF4-202ENST00000360001 RILPL2Q969X0 211 aa28.33■■■□□ 2.13
SDF4-202ENST00000360001 TM4SF1P30408 202 aa28.32■■■□□ 2.12
SDF4-202ENST00000360001 MFAP1P55081 439 aaKnown RBP28.32■■■□□ 2.12
SDF4-202ENST00000360001 COL23A1Q86Y22 540 aaPredicted RBP28.32■■■□□ 2.12
SDF4-202ENST00000360001 MAP4K4O95819 1239 aaPredicted RBP28.31■■■□□ 2.12
SDF4-202ENST00000360001 TIMM10P62072 90 aa28.31■■■□□ 2.12
SDF4-202ENST00000360001 AK9Q5TCS8 1911 aa28.31■■■□□ 2.12
SDF4-202ENST00000360001 COL4A1P02462 1669 aa28.31■■■□□ 2.12
SDF4-202ENST00000360001 METTL24Q5JXM2 366 aa28.31■■■□□ 2.12
SDF4-202ENST00000360001 CCDC24Q8N4L8 307 aa28.31■■■□□ 2.12
SDF4-202ENST00000360001 A0A1B0GUL7 405 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 VGLL2Q8N8G2 317 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 FLAD1Q8NFF5 587 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 UPF2Q9HAU5 1272 aaKnown RBP28.3■■■□□ 2.12
SDF4-202ENST00000360001 SPEF2Q9C093 1822 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 NEUROD6Q96NK8 337 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 NLRP3Q96P20 1036 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 AKAP2Q9Y2D5 859 aa28.3■■■□□ 2.12
SDF4-202ENST00000360001 TNRC6CQ9HCJ0 1690 aaKnown RBP28.29■■■□□ 2.12
SDF4-202ENST00000360001 CNBD1Q8NA66 436 aa28.29■■■□□ 2.12
SDF4-202ENST00000360001 ATP5JP18859 108 aa28.28■■■□□ 2.12
SDF4-202ENST00000360001 CNTROBQ8N137 903 aa28.28■■■□□ 2.12
SDF4-202ENST00000360001 PNPLA7Q6ZV29 1317 aa28.28■■■□□ 2.12
SDF4-202ENST00000360001 CASC1Q6TDU7 716 aa28.28■■■□□ 2.12
SDF4-202ENST00000360001 MPHOSPH8Q99549 860 aa28.28■■■□□ 2.12
SDF4-202ENST00000360001 IGHMBP2P38935 993 aaKnown RBP28.27■■■□□ 2.12
SDF4-202ENST00000360001 PRR5LQ6MZQ0 368 aa28.27■■■□□ 2.12
SDF4-202ENST00000360001 TBC1D32Q96NH3 1257 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms