RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SNED1Q8TER0 1413 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 COL4A1P02462 1669 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 GRAPQ13588 217 aa21.53■■□□□ 1.04
CLN3-203ENST00000357806 CC2D2BQ6DHV5 1058 aa21.53■■□□□ 1.04
CLN3-203ENST00000357806 RTKN2Q8IZC4 609 aa21.53■■□□□ 1.04
CLN3-203ENST00000357806 GRAPLQ8TC17 118 aaPredicted RBP21.53■■□□□ 1.04
CLN3-203ENST00000357806 H7C1W4 665 aa21.52■■□□□ 1.04
CLN3-203ENST00000357806 CCDC152Q4G0S7 254 aa21.52■■□□□ 1.04
CLN3-203ENST00000357806 ZNF784Q8NCA9 323 aaPredicted RBP21.52■■□□□ 1.04
CLN3-203ENST00000357806 TMX4Q9H1E5 349 aaPredicted RBP21.52■■□□□ 1.04
CLN3-203ENST00000357806 BBOX1O75936 387 aa21.52■■□□□ 1.03
CLN3-203ENST00000357806 RARSP54136 660 aaKnown RBP21.52■■□□□ 1.03
CLN3-203ENST00000357806 BRPF1P55201 1214 aaPredicted RBP21.52■■□□□ 1.03
CLN3-203ENST00000357806 GRIPAP1Q4V328 841 aa21.52■■□□□ 1.03
CLN3-203ENST00000357806 OLFM4Q6UX06 510 aa21.52■■□□□ 1.03
CLN3-203ENST00000357806 SRCIN1Q9C0H9 1055 aa21.52■■□□□ 1.03
CLN3-203ENST00000357806 KIF16BQ96L93 1317 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 ALDH1L1O75891 902 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 CTSWP56202 376 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 FKBP4Q02790 459 aaKnown RBP eCLIP21.51■■□□□ 1.03
CLN3-203ENST00000357806 TMC4Q7Z404 712 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 ATP6V0A2Q9Y487 856 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 LTBP1Q14766 1721 aa21.51■■□□□ 1.03
CLN3-203ENST00000357806 ZC3H4Q9UPT8 1303 aaKnown RBP21.5■■□□□ 1.03
CLN3-203ENST00000357806 PRELPP51888 382 aa21.5■■□□□ 1.03
CLN3-203ENST00000357806 CASP7P55210 303 aa21.49■■□□□ 1.03
CLN3-203ENST00000357806 A0A1B0GUL6 1792 aa21.48■■□□□ 1.03
CLN3-203ENST00000357806 GRM8O00222 908 aa21.48■■□□□ 1.03
CLN3-203ENST00000357806 CELF1Q92879 486 aaKnown RBP21.48■■□□□ 1.03
CLN3-203ENST00000357806 PSMD1Q99460 953 aa21.48■■□□□ 1.03
CLN3-203ENST00000357806 PLA2G12BQ9BX93 195 aa21.48■■□□□ 1.03
CLN3-203ENST00000357806 RTL9Q8NET4 1388 aa21.47■■□□□ 1.03
CLN3-203ENST00000357806 SP8Q8IXZ3 490 aa21.47■■□□□ 1.03
CLN3-203ENST00000357806 C9orf78Q9NZ63 289 aaPredicted RBP21.47■■□□□ 1.03
CLN3-203ENST00000357806 NOB1Q9ULX3 412 aaKnown RBP21.47■■□□□ 1.03
CLN3-203ENST00000357806 CCDC85AQ96PX6 553 aaPredicted RBP21.46■■□□□ 1.03
CLN3-203ENST00000357806 DUOX1Q9NRD9 1551 aa21.46■■□□□ 1.03
CLN3-203ENST00000357806 SLC51AQ86UW1 340 aa21.45■■□□□ 1.03
CLN3-203ENST00000357806 TTLL11Q8NHH1 800 aa21.45■■□□□ 1.03
CLN3-203ENST00000357806 API5Q9BZZ5 524 aaKnown RBP21.45■■□□□ 1.03
CLN3-203ENST00000357806 SEC31BQ9NQW1 1179 aa21.45■■□□□ 1.03
CLN3-203ENST00000357806 ZNF277Q9NRM2 450 aaPredicted RBP21.45■■□□□ 1.02
CLN3-203ENST00000357806 RPS8P62241 208 aaKnown RBP21.44■■□□□ 1.02
CLN3-203ENST00000357806 ZNF526Q8TF50 670 aaPredicted RBP21.44■■□□□ 1.02
CLN3-203ENST00000357806 CDC5LQ99459 802 aaKnown RBP21.44■■□□□ 1.02
CLN3-203ENST00000357806 GREM2Q9H772 168 aa21.44■■□□□ 1.02
CLN3-203ENST00000357806 GPBP1L1Q9HC44 474 aaPredicted RBP21.44■■□□□ 1.02
CLN3-203ENST00000357806 IARSP41252 1262 aaKnown RBP21.43■■□□□ 1.02
CLN3-203ENST00000357806 ARHGAP45Q92619 1136 aa21.43■■□□□ 1.02
CLN3-203ENST00000357806 CCT4P50991 539 aaKnown RBP21.42■■□□□ 1.02
CLN3-203ENST00000357806 DPP8Q6V1X1 898 aaPredicted RBP21.42■■□□□ 1.02
CLN3-203ENST00000357806 ANKRD18AQ8IVF6 992 aa21.42■■□□□ 1.02
CLN3-203ENST00000357806 MPNDQ8N594 471 aa21.42■■□□□ 1.02
CLN3-203ENST00000357806 SUPT20HQ8NEM7 779 aa21.42■■□□□ 1.02
CLN3-203ENST00000357806 UTYO14607 1347 aa21.42■■□□□ 1.02
CLN3-203ENST00000357806 WDR90Q96KV7 1748 aa21.42■■□□□ 1.02
CLN3-203ENST00000357806 IPO8O15397 1037 aaKnown RBP21.41■■□□□ 1.02
CLN3-203ENST00000357806 BCAR3O75815 825 aa21.41■■□□□ 1.02
CLN3-203ENST00000357806 KDM2BQ8NHM5 1336 aa21.41■■□□□ 1.02
CLN3-203ENST00000357806 COL4A5P29400 1685 aa21.4■■□□□ 1.02
CLN3-203ENST00000357806 CSF1RP07333 972 aa21.4■■□□□ 1.02
CLN3-203ENST00000357806 FAM161AQ3B820 660 aa21.4■■□□□ 1.02
CLN3-203ENST00000357806 RTFDC1Q9BY42 306 aaPredicted RBP21.4■■□□□ 1.02
CLN3-203ENST00000357806 SCN4AP35499 1836 aa21.4■■□□□ 1.02
CLN3-203ENST00000357806 NBPF7P0C2Y1 421 aaPredicted RBP21.39■■□□□ 1.02
CLN3-203ENST00000357806 ITGA6P23229 1130 aa21.39■■□□□ 1.02
CLN3-203ENST00000357806 FOXO4P98177 505 aa21.39■■□□□ 1.02
CLN3-203ENST00000357806 FRAT1Q92837 279 aaPredicted RBP21.39■■□□□ 1.01
CLN3-203ENST00000357806 VPS33BQ9H267 617 aa21.39■■□□□ 1.01
CLN3-203ENST00000357806 CHMP3Q9Y3E7 222 aa21.39■■□□□ 1.01
CLN3-203ENST00000357806 IGHMBP2P38935 993 aaKnown RBP21.38■■□□□ 1.01
CLN3-203ENST00000357806 ATF7IPQ6VMQ6 1270 aa21.38■■□□□ 1.01
CLN3-203ENST00000357806 JDP2Q8WYK2 163 aa21.38■■□□□ 1.01
CLN3-203ENST00000357806 NSFL1CQ9UNZ2 370 aaKnown RBP21.38■■□□□ 1.01
CLN3-203ENST00000357806 PSME4Q14997 1843 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 ANKRD18BA2A2Z9 1011 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 GLTPD2A6NH11 291 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 PPIP5K2O43314 1243 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 DPY19L2Q6NUT2 758 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 LARGE2Q8N3Y3 721 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 SUCLG2Q96I99 432 aa21.37■■□□□ 1.01
CLN3-203ENST00000357806 TRIM27P14373 513 aa21.36■■□□□ 1.01
CLN3-203ENST00000357806 GPSM2P81274 684 aa21.36■■□□□ 1.01
CLN3-203ENST00000357806 IFIT5Q13325 482 aaKnown RBP21.36■■□□□ 1.01
CLN3-203ENST00000357806 EPHA10Q5JZY3 1008 aa21.36■■□□□ 1.01
CLN3-203ENST00000357806 LMBR1LQ6UX01 489 aa21.36■■□□□ 1.01
CLN3-203ENST00000357806 USP44Q9H0E7 712 aa21.36■■□□□ 1.01
CLN3-203ENST00000357806 BSDC1Q9NW68 430 aaPredicted RBP21.36■■□□□ 1.01
CLN3-203ENST00000357806 AOC3Q16853 763 aa21.35■■□□□ 1.01
CLN3-203ENST00000357806 ZKSCAN2Q63HK3 967 aa21.35■■□□□ 1.01
CLN3-203ENST00000357806 PODXL2Q9NZ53 605 aa21.35■■□□□ 1.01
CLN3-203ENST00000357806 ANKIB1Q9P2G1 1089 aa21.35■■□□□ 1.01
CLN3-203ENST00000357806 XDHP47989 1333 aa21.34■■□□□ 1.01
CLN3-203ENST00000357806 CCDC57Q2TAC2 916 aa21.34■■□□□ 1.01
CLN3-203ENST00000357806 NIM1KQ8IY84 436 aa21.34■■□□□ 1.01
CLN3-203ENST00000357806 KAZALD1Q96I82 304 aa21.34■■□□□ 1.01
CLN3-203ENST00000357806 MPHOSPH8Q99549 860 aa21.34■■□□□ 1.01
CLN3-203ENST00000357806 KIAA2012Q0VF49 1180 aa21.33■■□□□ 1.01
CLN3-203ENST00000357806 INTS3Q68E01 1043 aaKnown RBP21.33■■□□□ 1.01
CLN3-203ENST00000357806 BICC1Q9H694 974 aaKnown RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms