RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TAGLNQ01995 201 aaKnown RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 KCNMA1Q12791 1236 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 MTMR3Q13615 1198 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 ADAM32Q8TC27 787 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 PRR36Q9H6K5 1346 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 TMEM2Q9UHN6 1383 aa3.21□□□□□ -1.89
VPS54-202ENST00000354504 USP17L5A8MUK1 530 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ATP9BO43861 1147 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 SH3RF1Q7Z6J0 888 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 NUDT12Q9BQG2 462 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 CARD11Q9BXL7 1154 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 UNC93B1Q9H1C4 597 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 CEP126Q9P2H0 1117 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 UNCXA6NJT0 531 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 PATL2C9JE40 543 aaKnown RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 TERTO14746 1132 aaKnown RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 PTK7Q13308 1070 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ALYREFQ86V81 257 aaKnown RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 USP31Q70CQ4 1352 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 RGS12O14924 1447 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 NSD3Q9BZ95 1437 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ZNF646O15015 1829 aaPredicted RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 MAGEB6P1A0A0J9YX57 407 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ZBBXA8MT70 800 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ZBTB24O43167 697 aaPredicted RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 MFAP1P55081 439 aaKnown RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 ELOAQ14241 798 aaKnown RBP3.21□□□□□ -1.9
VPS54-202ENST00000354504 SH3BP5LQ7L8J4 393 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 PNMA1Q8ND90 353 aa3.21□□□□□ -1.9
VPS54-202ENST00000354504 ROBO1Q9Y6N7 1651 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 H3BM21 787 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 IGHA1P01876 353 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 SKIP12755 728 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 PPP2R1AP30153 589 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 NR1H3Q13133 447 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 CYB5RLQ6IPT4 315 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 BAP1Q92560 729 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 ARFGEF2Q9Y6D5 1785 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 GIGYF1O75420 1035 aaPredicted RBP3.2□□□□□ -1.9
VPS54-202ENST00000354504 SKOR1P84550 965 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 NR5A1Q13285 461 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 SIRT1Q96EB6 747 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 PANK3Q9H999 370 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 ATP13A2Q9NQ11 1180 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 FCF1Q9Y324 198 aaKnown RBP3.2□□□□□ -1.9
VPS54-202ENST00000354504 CCNYL3P0C7X3 344 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 SEMA3FQ13275 785 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 FAM26DQ5JW98 314 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 CCDC24Q8N4L8 307 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 KLRG1Q96E93 195 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 MKRN1Q9UHC7 482 aaKnown RBP3.2□□□□□ -1.9
VPS54-202ENST00000354504 ZNF831Q5JPB2 1677 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 KDM2BQ8NHM5 1336 aa3.2□□□□□ -1.9
VPS54-202ENST00000354504 COL5A3P25940 1745 aaPredicted RBP3.19□□□□□ -1.9
VPS54-202ENST00000354504 NINLQ9Y2I6 1382 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ANKRD36CQ5JPF3 1778 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ZBTB7BO15156 539 aaPredicted RBP3.19□□□□□ -1.9
VPS54-202ENST00000354504 LTKP29376 864 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 RAB15P59190 212 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ANO2Q9NQ90 1003 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ZBTB7CA1YPR0 619 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L15C9J2P7 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L10C9JJH3 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L13C9JLJ4 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L12C9JPN9 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L11C9JVI0 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L21D6R901 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L18D6R9N7 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L22D6RA61 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L17D6RBQ6 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L19D6RCP7 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L20D6RJB6 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 AXIN1O15169 862 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 WFS1O76024 890 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ATG7O95352 703 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 USP17L24Q0WX57 530 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 RALBP1Q15311 655 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 ECM1Q16610 540 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 DUSP27Q5VZP5 1158 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 SLC16A10Q8TF71 515 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 NOVA2Q9UNW9 492 aaKnown RBP3.19□□□□□ -1.9
VPS54-202ENST00000354504 NSD2O96028 1365 aa3.19□□□□□ -1.9
VPS54-202ENST00000354504 GOLGB1Q14789 3259 aaKnown RBP3.19□□□□□ -1.9
VPS54-202ENST00000354504 TRIM32Q13049 653 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 PLEKHM2Q8IWE5 1019 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 PLPP7Q8NBV4 271 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 KLF16Q9BXK1 252 aaPredicted RBP3.18□□□□□ -1.9
VPS54-202ENST00000354504 SLC52A1Q9NWF4 448 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 AATKQ6ZMQ8 1374 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 PIK3R4Q99570 1358 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 PXDNQ92626 1479 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 SBF2Q86WG5 1849 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 AK9Q5TCS8 1911 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 MRC1P22897 1456 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 SFI1A8K8P3 1242 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 LORP23490 312 aaPredicted RBP3.18□□□□□ -1.9
VPS54-202ENST00000354504 SH3BP2P78314 561 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 OCLNQ16625 522 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 RGL3Q3MIN7 710 aa3.18□□□□□ -1.9
VPS54-202ENST00000354504 ERFEQ4G0M1 354 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms