RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 WHAMMP3Q1A5X7 153 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 TMEM57Q8N5G2 664 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 MIA2Q96PC5 1412 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 RUFY3Q7L099 469 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 CCDC85AQ96PX6 553 aaPredicted RBP14.59□□□□□ -0.07
USP47-202ENST00000339865 TTC21AQ8NDW8 1320 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 ADAMTS2O95450 1211 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 RHOXF2BP0C7M4 288 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 CCDC65Q8IXS2 484 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 TCP11L2Q8N4U5 519 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 RHOXF2Q9BQY4 288 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 TRIM47Q96LD4 638 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 SLC12A7Q9Y666 1083 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 FCHSD2O94868 740 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 COG7P83436 770 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 NAPBQ9H115 298 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 GOLGA8AA7E2F4 631 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 GOLGA8BA8MQT2 603 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 ZNF131P52739 623 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 CCDC14Q49A88 953 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 ZC4H2Q9NQZ6 224 aa14.59□□□□□ -0.07
USP47-202ENST00000339865 CRACR2BQ8N4Y2 399 aaPredicted RBP14.59□□□□□ -0.07
USP47-202ENST00000339865 RANBP6O60518 1105 aaKnown RBP14.58□□□□□ -0.07
USP47-202ENST00000339865 CTCFLQ8NI51 663 aaPredicted RBP14.58□□□□□ -0.07
USP47-202ENST00000339865 SMIM24O75264 130 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 TSNAXIP1Q2TAA8 658 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 NOLC1Q14978 699 aaKnown RBP eCLIP14.58□□□□□ -0.08
USP47-202ENST00000339865 GAS2L2Q8NHY3 880 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 DDX19AQ9NUU7 478 aaKnown RBP14.58□□□□□ -0.08
USP47-202ENST00000339865 CEP126Q9P2H0 1117 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 STK25O00506 426 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 HCLS1P14317 486 aaPredicted RBP14.58□□□□□ -0.08
USP47-202ENST00000339865 SSFA2P28290 1259 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 CCDC194A0A1B0GVG4 234 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 PRPF31Q8WWY3 499 aaKnown RBP14.58□□□□□ -0.08
USP47-202ENST00000339865 VCXQ9H320 206 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 BAG4O95429 457 aaKnown RBP14.58□□□□□ -0.08
USP47-202ENST00000339865 SKILP12757 684 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 GIMAP6Q6P9H5 292 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 STXBP4Q6ZWJ1 553 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 FMNL3Q8IVF7 1028 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 EXOC1Q9NV70 894 aa14.58□□□□□ -0.08
USP47-202ENST00000339865 DPH6Q7L8W6 267 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 TNPO1Q92973 898 aaKnown RBP14.57□□□□□ -0.08
USP47-202ENST00000339865 CCDC94Q9BW85 323 aaPredicted RBP14.57□□□□□ -0.08
USP47-202ENST00000339865 FAM169AQ9Y6X4 670 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 PPP1R7Q15435 360 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 TOM1L2Q6ZVM7 507 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 CARMIL1Q5VZK9 1371 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 ATP2A2P16615 1042 aaKnown RBP14.57□□□□□ -0.08
USP47-202ENST00000339865 ATICP31939 592 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 NBPF8Q3BBV2 869 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 IQCA1Q86XH1 822 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 SPAG5Q96R06 1193 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 UBA7P41226 1012 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 NAA16Q6N069 864 aaPredicted RBP14.57□□□□□ -0.08
USP47-202ENST00000339865 PPARDQ03181 441 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 AKAP2Q9Y2D5 859 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 ZC3H6P61129 1189 aaKnown RBP14.57□□□□□ -0.08
USP47-202ENST00000339865 ZBTB17Q13105 803 aa14.57□□□□□ -0.08
USP47-202ENST00000339865 GCKP35557 465 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 ZNF365Q70YC5 407 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 ESCO1Q5FWF5 840 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 PRPF40BQ6NWY9 871 aaKnown RBP14.56□□□□□ -0.08
USP47-202ENST00000339865 JAKMIP2Q96AA8 810 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 MCUR1Q96AQ8 359 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 VAV2P52735 878 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 LRCH2Q5VUJ6 765 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 ABTB2Q8N961 1025 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 KIAA1524Q8TCG1 905 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 TPX2Q9ULW0 747 aaKnown RBP14.56□□□□□ -0.08
USP47-202ENST00000339865 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.56□□□□□ -0.081e-6■■□□□ 11.4
USP47-202ENST00000339865 PRPHP41219 470 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 ATF7IPQ6VMQ6 1270 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 PHLDB2Q86SQ0 1253 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 MICAL1Q8TDZ2 1067 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 HAUS7Q99871 368 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 CCDC38Q502W7 563 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 NUTM1Q86Y26 1132 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 MX2P20592 715 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 PRKAR2BP31323 418 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 KANK3Q6NY19 840 aa14.56□□□□□ -0.08
USP47-202ENST00000339865 UTP14AQ9BVJ6 771 aaKnown RBP14.56□□□□□ -0.08
USP47-202ENST00000339865 PEX19P40855 299 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 ZNF444Q8N0Y2 327 aaPredicted RBP14.55□□□□□ -0.08
USP47-202ENST00000339865 FRMD4BQ9Y2L6 1034 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 INPP5BP32019 993 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 UBE2HP62256 183 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 SH2B1Q9NRF2 756 aaPredicted RBP14.55□□□□□ -0.08
USP47-202ENST00000339865 BOLA2Q9H3K6 86 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 TTF1Q15361 905 aaPredicted RBP14.55□□□□□ -0.08
USP47-202ENST00000339865 ATP2B3Q16720 1220 aa14.55□□□□□ -0.08
USP47-202ENST00000339865 RNF10Q8N5U6 811 aaKnown RBP14.55□□□□□ -0.08
USP47-202ENST00000339865 SF3A3Q12874 501 aaKnown RBP eCLIP14.54□□□□□ -0.085e-6■■□□□ 14.3
USP47-202ENST00000339865 ANO6Q4KMQ2 910 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 TRIM68Q6AZZ1 485 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 HDXQ7Z353 690 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 GBP5Q96PP8 586 aa14.54□□□□□ -0.08
USP47-202ENST00000339865 SMG6Q86US8 1419 aaKnown RBP14.54□□□□□ -0.08
USP47-202ENST00000339865 CETN3O15182 167 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms