RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MYL6BP14649 208 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 OPA1O60313 960 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 SKILP12757 684 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 PPP1R42Q7Z4L9 355 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 GOLGA1Q92805 767 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 ATP8B2P98198 1209 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 IQCDQ96DY2 449 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 RTL1A6NKG5 1358 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 CYLC1P35663 651 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 SPTY2D1Q68D10 685 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 CALML4Q96GE6 196 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 MSH6P52701 1360 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 HCLS1P14317 486 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 IARSP41252 1262 aaKnown RBP11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 ANKS4BQ8N8V4 417 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 CCDC194A0A1B0GVG4 234 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 UQCRFS1P1P0C7P4 283 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 CENPHQ9H3R5 247 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 DISP1Q96F81 1524 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 TRIM14Q14142 442 aa11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 PROSER2Q86WR7 435 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-202ENST00000336838 KRT83P78385 493 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 GABPB1Q06547 395 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 PDE4BQ07343 736 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 CWC25Q9NXE8 425 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 RTL9Q8NET4 1388 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.79□□□□□ -0.525e-6■■■■■ 52.9
CCDC88A-202ENST00000336838 METAP2P50579 478 aaKnown RBP eCLIP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 USP48Q86UV5 1035 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 RHPN1Q8TCX5 695 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 KIAA0232Q92628 1395 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 TYRO3Q06418 890 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 NSRP1Q9H0G5 558 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 NEFHP12036 1026 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 FERMT3Q86UX7 667 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 CKAP2LQ8IYA6 745 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 FAM135BQ49AJ0 1406 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 UNC13BO14795 1591 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 IDH1O75874 414 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 TOM1L2Q6ZVM7 507 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 HOOK3Q86VS8 718 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 TTC12Q9H892 705 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 ERICH4A6NGS2 130 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 NUTM2GQ5VZR2 741 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 KIAA1210Q9ULL0 1709 aa11.79□□□□□ -0.52
CCDC88A-202ENST00000336838 UBASH3AP57075 661 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 ANO6Q4KMQ2 910 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 NBPF7P0C2Y1 421 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 GNAQP50148 359 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 IFFO1Q0D2I5 559 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CNGA4Q8IV77 575 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 MAP3K5Q99683 1374 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 ANKRD18BA2A2Z9 1011 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 MCMDC2Q4G0Z9 681 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 BOLA2Q9H3K6 86 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CBX1P83916 185 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CALM1P0DP23 149 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CALM2P0DP24 149 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CALM3P0DP25 149 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 DYDC1Q8WWB3 177 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 BICDL2A1A5D9 508 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 PER1O15534 1290 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 MAP2K1Q02750 393 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 CLUL1Q15846 466 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 MFSD6Q6ZSS7 791 aa11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 SMARCA5O60264 1052 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-202ENST00000336838 USP37Q86T82 979 aa11.77□□□□□ -0.52
CCDC88A-202ENST00000336838 ZGPATQ8N5A5 531 aaKnown RBP11.77□□□□□ -0.52
CCDC88A-202ENST00000336838 HSF2BPO75031 334 aa11.77□□□□□ -0.52
CCDC88A-202ENST00000336838 CEP128Q6ZU80 1094 aa11.77□□□□□ -0.52
CCDC88A-202ENST00000336838 RASAL2Q9UJF2 1139 aa11.77□□□□□ -0.52
CCDC88A-202ENST00000336838 CTAGE15A4D2H0 777 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 GOLGA8AA7E2F4 631 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 KRT86O43790 486 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 KDM4AO75164 1064 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 CTAGE8P0CG41 777 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 CTAGE6Q86UF2 777 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 CTAGE4Q8IX94 777 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 CALML3P27482 149 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 RAI14Q9P0K7 980 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 PRDM11Q9NQV5 511 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 TTC14Q96N46 770 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 USP26Q9BXU7 913 aa11.77□□□□□ -0.53
CCDC88A-202ENST00000336838 PLEKHM2Q8IWE5 1019 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 ASXL2Q76L83 1435 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 GNG11P61952 73 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 ELP1O95163 1332 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 YTHDC2Q9H6S0 1430 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 SELENOOQ9BVL4 669 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 ERO1AQ96HE7 468 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 TMOD3Q9NYL9 352 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 SNRPA1P09661 255 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 NF2P35240 595 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 RUFY3Q7L099 469 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 LMBR1Q8WVP7 490 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 MAP3K2Q9Y2U5 619 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 QRICH2Q9H0J4 1663 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 IL15P40933 162 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 ERMNQ8TAM6 284 aa11.76□□□□□ -0.53
CCDC88A-202ENST00000336838 PIBF1Q8WXW3 757 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms