RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 TTC41PQ6P2S7 1318 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 KDM5CP41229 1560 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 MYL1P05976 194 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 ARHGAP25P42331 645 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 EVCP57679 992 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 BRAPQ7Z569 592 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 ARHGAP22Q7Z5H3 698 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 OR8K1Q8NGG5 319 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 SNRNP27Q8WVK2 155 aaKnown RBP9.9□□□□□ -0.82
TDP1-201ENST00000335725 TBC1D5Q92609 795 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 CD248Q9HCU0 757 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 MRFAP1Q9Y605 127 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 WDR33Q9C0J8 1336 aaKnown RBP9.9□□□□□ -0.82
TDP1-201ENST00000335725 SYNRGQ9UMZ2 1314 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 POTEB2H3BUK9 544 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 CDC45O75419 566 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 DEUP1Q05D60 604 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 LONRF2Q1L5Z9 754 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 CFAP53Q96M91 514 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 UNC45AQ9H3U1 944 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 DNAI1Q9UI46 699 aa9.9□□□□□ -0.82
TDP1-201ENST00000335725 G3BP2Q9UN86 482 aaKnown RBP9.9□□□□□ -0.82
TDP1-201ENST00000335725 PHLPP2Q6ZVD8 1323 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 ATP10AO60312 1499 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 PLB1Q6P1J6 1458 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 E9PCH4 1651 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 CFAP43Q8NDM7 1665 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 IPO5O00410 1097 aaKnown RBP9.9□□□□□ -0.83
TDP1-201ENST00000335725 FSBPO95073 299 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 NBPF7P0C2Y1 421 aaPredicted RBP9.9□□□□□ -0.83
TDP1-201ENST00000335725 GJA8P48165 433 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 GNAI1P63096 354 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 CCDC15Q0P6D6 951 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 G3BP1Q13283 466 aaKnown RBP eCLIP9.9□□□□□ -0.83
TDP1-201ENST00000335725 KCNV2Q8TDN2 545 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 TMOD4Q9NZQ9 345 aa9.9□□□□□ -0.83
TDP1-201ENST00000335725 GADD45BO75293 160 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 SESN3P58005 492 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 MVPQ14764 893 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 FOXD4L5Q5VV16 416 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 CAPRIN2Q6IMN6 1127 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 B4GALNT4Q76KP1 1039 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 LMBR1Q8WVP7 490 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 FOXD4L4Q8WXT5 416 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 TRMT1Q9NXH9 659 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 PSDA5PKW4 1024 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 ENO4A6NNW6 628 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 CAVIN2O95810 425 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 CHGAP10645 457 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 GSDMDP57764 484 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 GNL2Q13823 731 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 SLMAPQ14BN4 828 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 TBC1D9Q6ZT07 1266 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 HELBQ8NG08 1087 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 RABGGTAQ92696 567 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 USP26Q9BXU7 913 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 TRIM4Q9C037 500 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 MMADHCQ9H3L0 296 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 PDE11AQ9HCR9 933 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 BIN2Q9UBW5 565 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 NRBP1Q9UHY1 535 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 FAN1Q9Y2M0 1017 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 USP27XA6NNY8 438 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 VCAM1P19320 739 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 ROR2Q01974 943 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 KCNB1Q14721 858 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 CCDC181Q5TID7 509 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 CWF19L1Q69YN2 538 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 CCDC170Q8IYT3 715 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 HNRNPLLQ8WVV9 542 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 TEKT1Q969V4 418 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 HOOK2Q96ED9 719 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 YIPF2Q9BWQ6 316 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 BICC1Q9H694 974 aaKnown RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 KLC4Q9NSK0 619 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 ATP6V1DQ9Y5K8 247 aa9.89□□□□□ -0.83
TDP1-201ENST00000335725 U3KPZ7 1027 aaPredicted RBP9.89□□□□□ -0.83
TDP1-201ENST00000335725 FAM135AQ9P2D6 1515 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 SAMD9Q5K651 1589 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 SASH1O94885 1247 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 TUBB4BP68371 445 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 CEP57Q86XR8 500 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 SMCR8Q8TEV9 937 aaPredicted RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 RBM17Q96I25 401 aaKnown RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 ALS2CR12Q96Q35 445 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 MTA3Q9BTC8 594 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 GBP3Q9H0R5 595 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 GOLGA6L9A6NEM1 432 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 GCLCP48506 637 aaPredicted RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 MAP3K9P80192 1104 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 PRPF4BQ13523 1007 aaKnown RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 GIMAP6Q6P9H5 292 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 AFAP1L1Q8TED9 768 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 INTS4Q96HW7 963 aaKnown RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 ANKRD30BQ9BXX2 1392 aa9.88□□□□□ -0.83
TDP1-201ENST00000335725 ZNF608Q9ULD9 1512 aaPredicted RBP9.88□□□□□ -0.83
TDP1-201ENST00000335725 FRMD3A2A2Y4 597 aa9.87□□□□□ -0.83
TDP1-201ENST00000335725 PLCB4Q15147 1175 aa9.87□□□□□ -0.83
TDP1-201ENST00000335725 SNCBQ16143 134 aa9.87□□□□□ -0.83
TDP1-201ENST00000335725 CCDC80Q76M96 950 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms