RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.63■■□□□ 1.21
RTN4-201ENST00000317610 BOLA2Q9H3K6 86 aa22.63■■□□□ 1.21
RTN4-201ENST00000317610 RIOK3O14730 519 aaKnown RBP22.62■■□□□ 1.21
RTN4-201ENST00000317610 ANO6Q4KMQ2 910 aa22.62■■□□□ 1.21
RTN4-201ENST00000317610 C1orf141Q5JVX7 400 aa22.62■■□□□ 1.21
RTN4-201ENST00000317610 PLA2G4DQ86XP0 818 aa22.62■■□□□ 1.21
RTN4-201ENST00000317610 LRRC59Q96AG4 307 aaKnown RBP22.62■■□□□ 1.21
RTN4-201ENST00000317610 ARID3AQ99856 593 aa22.62■■□□□ 1.21
RTN4-201ENST00000317610 DDX58O95786 925 aaKnown RBP22.62■■□□□ 1.21
RTN4-201ENST00000317610 TCEANC2Q96MN5 208 aa22.62■■□□□ 1.21
RTN4-201ENST00000317610 DDX21Q9NR30 783 aaKnown RBP eCLIP22.62■■□□□ 1.214e-6■■■■□ 21
RTN4-201ENST00000317610 TAF5LO75529 589 aa22.61■■□□□ 1.21
RTN4-201ENST00000317610 ZNF589Q86UQ0 364 aaPredicted RBP22.61■■□□□ 1.21
RTN4-201ENST00000317610 ANKRD7Q92527 254 aa22.61■■□□□ 1.21
RTN4-201ENST00000317610 CHMP3Q9Y3E7 222 aa22.61■■□□□ 1.21
RTN4-201ENST00000317610 PRAMEF22A3QJZ6 481 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 GOLGA6L4A6NEF3 574 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 KRT32Q14532 448 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 CKAP2LQ8IYA6 745 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 ZNF75DP51815 510 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 GTF3C6Q969F1 213 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 RFX7Q2KHR2 1363 aa22.6■■□□□ 1.21
RTN4-201ENST00000317610 PDIA6Q15084 440 aa22.59■■□□□ 1.21
RTN4-201ENST00000317610 PGBD1Q96JS3 809 aa22.59■■□□□ 1.21
RTN4-201ENST00000317610 TFIP11Q9UBB9 837 aaKnown RBP22.59■■□□□ 1.21
RTN4-201ENST00000317610 IGKV5-2P06315 115 aa22.59■■□□□ 1.21
RTN4-201ENST00000317610 RESTQ13127 1097 aa22.59■■□□□ 1.21
RTN4-201ENST00000317610 CCDC186Q7Z3E2 898 aa22.58■■□□□ 1.21
RTN4-201ENST00000317610 FAM177BA6PVY3 158 aa22.58■■□□□ 1.2
RTN4-201ENST00000317610 CAVIN2O95810 425 aa22.58■■□□□ 1.2
RTN4-201ENST00000317610 COL15A1P39059 1388 aa22.57■■□□□ 1.2
RTN4-201ENST00000317610 NR1I2O75469 434 aa22.57■■□□□ 1.2
RTN4-201ENST00000317610 UTP14CQ5TAP6 766 aaKnown RBP22.57■■□□□ 1.2
RTN4-201ENST00000317610 FER1L4A9Z1Z3 1794 aa22.57■■□□□ 1.2
RTN4-201ENST00000317610 SLIT3O75094 1523 aa22.57■■□□□ 1.2
RTN4-201ENST00000317610 MYH15Q9Y2K3 1946 aa22.57■■□□□ 1.2
RTN4-201ENST00000317610 PPP4R3BQ5MIZ7 849 aa22.56■■□□□ 1.2
RTN4-201ENST00000317610 SIL1Q9H173 461 aa22.56■■□□□ 1.2
RTN4-201ENST00000317610 ATP5JP18859 108 aa22.56■■□□□ 1.2
RTN4-201ENST00000317610 CDC25BP30305 580 aa22.56■■□□□ 1.2
RTN4-201ENST00000317610 STK3Q13188 491 aa22.56■■□□□ 1.2
RTN4-201ENST00000317610 JAK2O60674 1132 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 ZSCAN25Q6NSZ9 544 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 PDCL2Q8N4E4 241 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 NEK1Q96PY6 1258 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 TRIM5Q9C035 493 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 ZSCAN16Q9H4T2 348 aaPredicted RBP22.55■■□□□ 1.2
RTN4-201ENST00000317610 C5P01031 1676 aa22.55■■□□□ 1.2
RTN4-201ENST00000317610 NEURL1BA8MQ27 555 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 ZSCAN20P17040 1043 aaPredicted RBP22.54■■□□□ 1.2
RTN4-201ENST00000317610 ZNF165P49910 485 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 DMTNQ08495 405 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 SYCP1Q15431 976 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 ARHGEF25Q86VW2 580 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 BRF1Q92994 677 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 COPRSQ9NQ92 184 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 LRMPQ12912 555 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 BICD2Q8TD16 824 aa22.54■■□□□ 1.2
RTN4-201ENST00000317610 ATP2B3Q16720 1220 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 NRBP1Q9UHY1 535 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 GCKRQ14397 625 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 SMARCC2Q8TAQ2 1214 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 KLHDC4Q8TBB5 520 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 DNAJC25Q9H1X3 360 aa22.53■■□□□ 1.2
RTN4-201ENST00000317610 U3KPZ7 1027 aaPredicted RBP22.53■■□□□ 1.2
RTN4-201ENST00000317610 PSME1Q06323 249 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 AIMP1Q12904 312 aaKnown RBP22.52■■□□□ 1.2
RTN4-201ENST00000317610 EPHA10Q5JZY3 1008 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 SARM1Q6SZW1 724 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 RIC3Q7Z5B4 369 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 CFAP45Q9UL16 551 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 SMTNL1A8MU46 457 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 DRC7Q8IY82 874 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 EDC3Q96F86 508 aaKnown RBP22.52■■□□□ 1.2
RTN4-201ENST00000317610 PRDM10Q9NQV6 1147 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 DBNLQ9UJU6 430 aaKnown RBP22.52■■□□□ 1.2
RTN4-201ENST00000317610 ZNF609O15014 1411 aa22.52■■□□□ 1.2
RTN4-201ENST00000317610 RFX5P48382 616 aaPredicted RBP22.51■■□□□ 1.19
RTN4-201ENST00000317610 Q6ZUG5 572 aa22.51■■□□□ 1.19
RTN4-201ENST00000317610 LLPHQ9BRT6 129 aaKnown RBP22.51■■□□□ 1.19
RTN4-201ENST00000317610 NEXNQ0ZGT2 675 aa22.51■■□□□ 1.19
RTN4-201ENST00000317610 LAMA4Q16363 1823 aa22.5■■□□□ 1.19
RTN4-201ENST00000317610 IQCB1Q15051 598 aa22.5■■□□□ 1.19
RTN4-201ENST00000317610 TNNI3KQ59H18 835 aa22.5■■□□□ 1.19
RTN4-201ENST00000317610 ANKRD24Q8TF21 1146 aa22.5■■□□□ 1.19
RTN4-201ENST00000317610 METTL22Q9BUU2 404 aaPredicted RBP22.5■■□□□ 1.19
RTN4-201ENST00000317610 FPGT-TNNI3KV9GXZ4 949 aa22.5■■□□□ 1.19
RTN4-201ENST00000317610 GCP02774 474 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 ADD1P35611 737 aaKnown RBP22.49■■□□□ 1.19
RTN4-201ENST00000317610 CLIP2Q9UDT6 1046 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 H3BQV1 296 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 CTAGE5O15320 804 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 CBX1P83916 185 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 IFFO2Q5TF58 517 aa22.49■■□□□ 1.19
RTN4-201ENST00000317610 CACTINQ8WUQ7 758 aaKnown RBP22.49■■□□□ 1.19
RTN4-201ENST00000317610 SCN11AQ9UI33 1791 aa22.48■■□□□ 1.19
RTN4-201ENST00000317610 CYP21A2P08686 494 aa22.48■■□□□ 1.19
RTN4-201ENST00000317610 NAA16Q6N069 864 aaPredicted RBP22.48■■□□□ 1.19
RTN4-201ENST00000317610 PAXBP1Q9Y5B6 917 aa22.48■■□□□ 1.19
RTN4-201ENST00000317610 PFKFB2O60825 505 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms