RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SUPT20HQ8NEM7 779 aa25.17■■□□□ 1.62
LIME1-201ENST00000309546 LRRC37AA6NMS7 1700 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 IRS4O14654 1257 aaPredicted RBP25.16■■□□□ 1.62
LIME1-201ENST00000309546 MPNDQ8N594 471 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 CHMP4AQ9BY43 222 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 SALL2Q9Y467 1007 aaPredicted RBP25.16■■□□□ 1.62
LIME1-201ENST00000309546 DDX58O95786 925 aaKnown RBP25.15■■□□□ 1.62
LIME1-201ENST00000309546 TRIM28Q13263 835 aaKnown RBP25.15■■□□□ 1.62
LIME1-201ENST00000309546 CLEC11AQ9Y240 323 aa25.15■■□□□ 1.62
LIME1-201ENST00000309546 STK31Q9BXU1 1019 aa25.14■■□□□ 1.62
LIME1-201ENST00000309546 LTBP1Q14766 1721 aa25.14■■□□□ 1.61
LIME1-201ENST00000309546 COL4A1P02462 1669 aa25.13■■□□□ 1.61
LIME1-201ENST00000309546 ADAMTSL1Q8N6G6 1762 aa25.13■■□□□ 1.61
LIME1-201ENST00000309546 LMOD1P29536 600 aaPredicted RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 SF3B3Q15393 1217 aaKnown RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 CELF1Q92879 486 aaKnown RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 RTFDC1Q9BY42 306 aaPredicted RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 TWISTNBQ3B726 338 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 TMC4Q7Z404 712 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 PNMA8AQ86V59 439 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 ZBTB38Q8NAP3 1195 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 VPS33BQ9H267 617 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 DUOX1Q9NRD9 1551 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 METTL22Q9BUU2 404 aaPredicted RBP25.11■■□□□ 1.61
LIME1-201ENST00000309546 CWC25Q9NXE8 425 aaPredicted RBP25.11■■□□□ 1.61
LIME1-201ENST00000309546 MAP3K2Q9Y2U5 619 aa25.11■■□□□ 1.61
LIME1-201ENST00000309546 IL16Q14005 1332 aa25.11■■□□□ 1.61
LIME1-201ENST00000309546 CCDC191Q8NCU4 936 aa25.1■■□□□ 1.61
LIME1-201ENST00000309546 JARID2Q92833 1246 aaPredicted RBP25.1■■□□□ 1.61
LIME1-201ENST00000309546 ZNRF3Q9ULT6 936 aa25.1■■□□□ 1.61
LIME1-201ENST00000309546 SCNN1DP51172 638 aa25.09■■□□□ 1.61
LIME1-201ENST00000309546 FANCIQ9NVI1 1328 aa25.09■■□□□ 1.61
LIME1-201ENST00000309546 PCCAP05165 728 aaPredicted RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 HSP90B1P14625 803 aaKnown RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 KIAA2012Q0VF49 1180 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 KSR2Q6VAB6 950 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 FAM9BQ8IZU0 186 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 JMYQ8N9B5 988 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 NSFL1CQ9UNZ2 370 aaKnown RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 PASKQ96RG2 1323 aa25.08■■□□□ 1.6
LIME1-201ENST00000309546 PI4KAP2A4QPH2 592 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 EPS15P42566 896 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 NCBP3Q53F19 620 aaKnown RBP25.07■■□□□ 1.6
LIME1-201ENST00000309546 PI4KAP1Q8N8J0 262 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 CREBZFQ9NS37 354 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 CXCL9Q07325 125 aa25.06■■□□□ 1.6
LIME1-201ENST00000309546 MAP1SQ66K74 1059 aaPredicted RBP25.06■■□□□ 1.6
LIME1-201ENST00000309546 CCDC85AQ96PX6 553 aaPredicted RBP25.06■■□□□ 1.6
LIME1-201ENST00000309546 SEC31BQ9NQW1 1179 aa25.06■■□□□ 1.6
LIME1-201ENST00000309546 PDE8AO60658 829 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 SLC4A2P04920 1241 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 NEXNQ0ZGT2 675 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 G2E3Q7L622 706 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 MKRN1Q9UHC7 482 aaKnown RBP25.05■■□□□ 1.6
LIME1-201ENST00000309546 MYH3P11055 1940 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 RAD17O75943 681 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 ITGBL1O95965 494 aaPredicted RBP25.04■■□□□ 1.6
LIME1-201ENST00000309546 RPS8P62241 208 aaKnown RBP25.04■■□□□ 1.6
LIME1-201ENST00000309546 GPSM2P81274 684 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CCDC152Q4G0S7 254 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CIAPIN1Q6FI81 312 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 WDR63Q8IWG1 891 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CNTROBQ8N137 903 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 C6orf229H3BNL8 230 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 IGKV5-2P06315 115 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 CACNA1FO60840 1977 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 RIMBP2O15034 1052 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 WASHC4Q2M389 1173 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 BCL2L13Q9BXK5 485 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 GPRC5DQ9NZD1 345 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 SPEF2Q9C093 1822 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 GMPSP49915 693 aaPredicted RBP25.01■■□□□ 1.59
LIME1-201ENST00000309546 CWF19L2Q2TBE0 894 aaKnown RBP25.01■■□□□ 1.59
LIME1-201ENST00000309546 POLLQ9UGP5 575 aa25.01■■□□□ 1.59
LIME1-201ENST00000309546 CDHR2Q9BYE9 1310 aa25.01■■□□□ 1.59
LIME1-201ENST00000309546 TMEM88BA6NKF7 163 aa25■■□□□ 1.59
LIME1-201ENST00000309546 YDJCA8MPS7 323 aa25■■□□□ 1.59
LIME1-201ENST00000309546 EXOSC9Q06265 439 aaKnown RBP25■■□□□ 1.59
LIME1-201ENST00000309546 FLIIQ13045 1269 aa25■■□□□ 1.59
LIME1-201ENST00000309546 TNIP1Q15025 636 aa25■■□□□ 1.59
LIME1-201ENST00000309546 USP50Q70EL3 339 aaPredicted RBP25■■□□□ 1.59
LIME1-201ENST00000309546 GPR101Q96P66 508 aaPredicted RBP25■■□□□ 1.59
LIME1-201ENST00000309546 DBNDD1Q9H9R9 158 aa25■■□□□ 1.59
LIME1-201ENST00000309546 NEURL1BA8MQ27 555 aa24.99■■□□□ 1.59
LIME1-201ENST00000309546 FKBP5Q13451 457 aaPredicted RBP24.99■■□□□ 1.59
LIME1-201ENST00000309546 EYA3Q99504 573 aa24.99■■□□□ 1.59
LIME1-201ENST00000309546 ADARB2Q9NS39 739 aaKnown RBP24.99■■□□□ 1.59
LIME1-201ENST00000309546 CTSWP56202 376 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 TBC1D16Q8TBP0 767 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 ANKIB1Q9P2G1 1089 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 CNTNAP1P78357 1384 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 VAMP4O75379 141 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 ANKRD18AQ8IVF6 992 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 SPINK5Q9NQ38 1064 aaPredicted RBP24.97■■□□□ 1.59
LIME1-201ENST00000309546 UFL1O94874 794 aa24.96■■□□□ 1.59
LIME1-201ENST00000309546 DOK7Q18PE1 504 aa24.96■■□□□ 1.59
LIME1-201ENST00000309546 ECE2O60344 883 aa24.95■■□□□ 1.58
LIME1-201ENST00000309546 HSPA1AP0DMV8 641 aaKnown RBP24.95■■□□□ 1.58
LIME1-201ENST00000309546 HSPA1BP0DMV9 641 aaKnown RBP24.95■■□□□ 1.58
LIME1-201ENST00000309546 UBE3BQ7Z3V4 1068 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms