RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 TBC1D9Q6ZT07 1266 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 SLC12A5Q9H2X9 1139 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 KIAA1107Q9UPP5 1409 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 SF3B2Q13435 895 aaKnown RBP15.79■□□□□ 0.12
CSPG4-201ENST00000308508 LMNTD2Q8IXW0 634 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 ZNF830Q96NB3 372 aaPredicted RBP15.79■□□□□ 0.12
CSPG4-201ENST00000308508 TBC1D32Q96NH3 1257 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 TRIM7Q9C029 511 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 SYNCQ9H7C4 482 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 LRPPRCP42704 1394 aaKnown RBP15.79■□□□□ 0.12
CSPG4-201ENST00000308508 CIB2O75838 187 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 GSTA5Q7RTV2 222 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 CEP120Q8N960 986 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 A6NNZ2 444 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 TUBB8Q3ZCM7 444 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 ATP2A2P16615 1042 aaKnown RBP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 TSGA10Q9BZW7 698 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 FEZ2Q9UHY8 353 aaPredicted RBP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 ARL1P40616 181 aaPredicted RBP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 METAP2P50579 478 aaKnown RBP eCLIP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 RARSP54136 660 aaKnown RBP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 CCDC186Q7Z3E2 898 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 GBP1P32455 592 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 VCX3BQ9H321 246 aa15.78■□□□□ 0.12
CSPG4-201ENST00000308508 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.78■□□□□ 0.12
CSPG4-201ENST00000308508 STARD3NLO95772 234 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 ATP5DP30049 168 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 DUSP27Q5VZP5 1158 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 SLF2Q8IX21 1173 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 ATAD2Q6PL18 1390 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 TBCAO75347 108 aaKnown RBP15.77■□□□□ 0.12
CSPG4-201ENST00000308508 POTEDQ86YR6 584 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 KIAA1524Q8TCG1 905 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 USP16Q9Y5T5 823 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 NDC80O14777 642 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 MRPS9P82933 396 aaKnown RBP15.77■□□□□ 0.12
CSPG4-201ENST00000308508 MTRF1LQ9UGC7 380 aaKnown RBP15.77■□□□□ 0.12
CSPG4-201ENST00000308508 ZNF652Q9Y2D9 606 aa15.77■□□□□ 0.12
CSPG4-201ENST00000308508 TTF1Q15361 905 aaPredicted RBP15.77■□□□□ 0.11
CSPG4-201ENST00000308508 TMEM67Q5HYA8 995 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 KRBA2Q6ZNG9 492 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 TOM1L2Q6ZVM7 507 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 SMC1BQ8NDV3 1235 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 PTPRCP08575 1304 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 STAT6P42226 847 aa15.77■□□□□ 0.11
CSPG4-201ENST00000308508 SEC62Q99442 399 aaKnown RBP15.77■□□□□ 0.11
CSPG4-201ENST00000308508 INTS8Q75QN2 995 aaKnown RBP15.76■□□□□ 0.11
CSPG4-201ENST00000308508 CCDC144CPQ8IYA2 1237 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 RUSC2Q8N2Y8 1516 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 SLC5A1P13866 664 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 DDX54Q8TDD1 881 aaKnown RBP15.76■□□□□ 0.11
CSPG4-201ENST00000308508 GMNNO75496 209 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 RRAGBQ5VZM2 374 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 ORC3Q9UBD5 711 aaPredicted RBP15.76■□□□□ 0.11
CSPG4-201ENST00000308508 CABP1Q9NZU7 370 aa15.76■□□□□ 0.11
CSPG4-201ENST00000308508 ODF2LQ9ULJ1 636 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 XRCC6P12956 609 aaKnown RBP eCLIP15.75■□□□□ 0.11
CSPG4-201ENST00000308508 FAM184BQ9ULE4 1060 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 HMGB2P26583 209 aaKnown RBP15.75■□□□□ 0.11
CSPG4-201ENST00000308508 CFAP157Q5JU67 520 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 NEK1Q96PY6 1258 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 RTEL1-TNFRSF6BF6WH68 1400 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 CASKIN1Q8WXD9 1431 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 PCK1P35558 622 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 ERMNQ8TAM6 284 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 CADPSQ9ULU8 1353 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 PSMA7O14818 248 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 NBPF7P0C2Y1 421 aaPredicted RBP15.75■□□□□ 0.11
CSPG4-201ENST00000308508 IFIT5Q13325 482 aaKnown RBP15.75■□□□□ 0.11
CSPG4-201ENST00000308508 CCDC14Q49A88 953 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 SSH1Q8WYL5 1049 aa15.75■□□□□ 0.11
CSPG4-201ENST00000308508 PANK2Q9BZ23 570 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 NSD3Q9BZ95 1437 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 TXNDC16Q9P2K2 825 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 NCOA7Q8NI08 942 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 BUB1BO60566 1050 aaPredicted RBP15.74■□□□□ 0.11
CSPG4-201ENST00000308508 AOPEPQ8N6M6 819 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 CASQ2O14958 399 aaPredicted RBP15.74■□□□□ 0.11
CSPG4-201ENST00000308508 CEP128Q6ZU80 1094 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 AFAP1L1Q8TED9 768 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 ZNF644Q9H582 1327 aaPredicted RBP15.74■□□□□ 0.11
CSPG4-201ENST00000308508 PTGS1P23219 599 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 TNNC1P63316 161 aa15.74■□□□□ 0.11
CSPG4-201ENST00000308508 NBPF8Q3BBV2 869 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 MRPS27Q92552 414 aaKnown RBP15.73■□□□□ 0.11
CSPG4-201ENST00000308508 PDE4BQ07343 736 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 EHBP1L1Q8N3D4 1523 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 TSNAXIP1Q2TAA8 658 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 USP48Q86UV5 1035 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 KCNK9Q9NPC2 374 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 MFSD6Q6ZSS7 791 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 CCDC85AQ96PX6 553 aaPredicted RBP15.73■□□□□ 0.11
CSPG4-201ENST00000308508 SLC26A6Q9BXS9 759 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 CAPZA3Q96KX2 299 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 MICU3Q86XE3 530 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 BICD1Q96G01 975 aa15.73■□□□□ 0.11
CSPG4-201ENST00000308508 CLNS1AP54105 237 aaKnown RBP15.72■□□□□ 0.11
CSPG4-201ENST00000308508 IFT81Q8WYA0 676 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms