RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 POLA2Q14181 598 aa27.23■■□□□ 1.95
PDLIM3-203ENST00000284771 ANKRD31Q8N7Z5 1873 aa27.22■■□□□ 1.95
PDLIM3-203ENST00000284771 GREM2Q9H772 168 aa27.22■■□□□ 1.95
PDLIM3-203ENST00000284771 PTGER2P43116 358 aa27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 RFX5P48382 616 aaPredicted RBP27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 HDAC1Q13547 482 aaPredicted RBP27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 SF3B3Q15393 1217 aaKnown RBP27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 FAM161AQ3B820 660 aa27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 NLRP3Q96P20 1036 aa27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 HSP90B1P14625 803 aaKnown RBP27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 CHMP3Q9Y3E7 222 aa27.21■■□□□ 1.95
PDLIM3-203ENST00000284771 RIC1Q4ADV7 1423 aa27.2■■□□□ 1.95
PDLIM3-203ENST00000284771 KLRG2A4D1S0 409 aaPredicted RBP27.2■■□□□ 1.94
PDLIM3-203ENST00000284771 KLHDC4Q8TBB5 520 aa27.2■■□□□ 1.94
PDLIM3-203ENST00000284771 CCDC136Q96JN2 1154 aa27.2■■□□□ 1.94
PDLIM3-203ENST00000284771 BRIP1Q9BX63 1249 aa27.19■■□□□ 1.94
PDLIM3-203ENST00000284771 SEC31BQ9NQW1 1179 aa27.18■■□□□ 1.94
PDLIM3-203ENST00000284771 COL4A1P02462 1669 aa27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 TAF1P21675 1872 aa27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 PA2G4Q9UQ80 394 aaKnown RBP27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 ITGA6P23229 1130 aa27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 PTPN12Q05209 780 aaKnown RBP27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 CRY2Q49AN0 593 aa27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 RWDD1Q9H446 243 aaPredicted RBP27.17■■□□□ 1.94
PDLIM3-203ENST00000284771 SRCAPQ6ZRS2 3230 aa27.16■■□□□ 1.94
PDLIM3-203ENST00000284771 POLD1P28340 1107 aa27.16■■□□□ 1.94
PDLIM3-203ENST00000284771 CCDC152Q4G0S7 254 aa27.16■■□□□ 1.94
PDLIM3-203ENST00000284771 ZNF594Q96JF6 807 aaPredicted RBP27.16■■□□□ 1.94
PDLIM3-203ENST00000284771 HMMRO75330 724 aa27.15■■□□□ 1.94
PDLIM3-203ENST00000284771 IFIT5Q13325 482 aaKnown RBP27.14■■□□□ 1.94
PDLIM3-203ENST00000284771 CCDC57Q2TAC2 916 aa27.14■■□□□ 1.94
PDLIM3-203ENST00000284771 DCTPP1Q9H773 170 aa27.14■■□□□ 1.94
PDLIM3-203ENST00000284771 RTL9Q8NET4 1388 aa27.14■■□□□ 1.94
PDLIM3-203ENST00000284771 KDM2BQ8NHM5 1336 aa27.14■■□□□ 1.93
PDLIM3-203ENST00000284771 COPRSQ9NQ92 184 aa27.13■■□□□ 1.93
PDLIM3-203ENST00000284771 C10orf71Q711Q0 1435 aa27.13■■□□□ 1.93
PDLIM3-203ENST00000284771 EXOC6BQ9Y2D4 811 aa27.12■■□□□ 1.93
PDLIM3-203ENST00000284771 ANKRD18BA2A2Z9 1011 aa27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 PDE6BP35913 854 aa27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 SPON1Q9HCB6 807 aa27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 NOP58Q9Y2X3 529 aaKnown RBP27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 SURF6O75683 361 aaKnown RBP27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 SRGNP10124 158 aa27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 CELF1Q92879 486 aaKnown RBP27.11■■□□□ 1.93
PDLIM3-203ENST00000284771 SMC5Q8IY18 1101 aa27.1■■□□□ 1.93
PDLIM3-203ENST00000284771 PUS3Q9BZE2 481 aaKnown RBP27.1■■□□□ 1.93
PDLIM3-203ENST00000284771 SIL1Q9H173 461 aa27.1■■□□□ 1.93
PDLIM3-203ENST00000284771 COL11A2P13942 1736 aaPredicted RBP27.1■■□□□ 1.93
PDLIM3-203ENST00000284771 KIF13BQ9NQT8 1826 aa27.09■■□□□ 1.93
PDLIM3-203ENST00000284771 GOLGB1Q14789 3259 aaKnown RBP27.09■■□□□ 1.93
PDLIM3-203ENST00000284771 HOXA10P31260 410 aaPredicted RBP27.08■■□□□ 1.93
PDLIM3-203ENST00000284771 CHRNA5P30532 468 aa27.08■■□□□ 1.92
PDLIM3-203ENST00000284771 LRRC24Q50LG9 513 aa27.08■■□□□ 1.92
PDLIM3-203ENST00000284771 DDX46Q7L014 1031 aaKnown RBP27.07■■□□□ 1.92
PDLIM3-203ENST00000284771 ATG9AQ7Z3C6 839 aa27.07■■□□□ 1.92
PDLIM3-203ENST00000284771 RPGRQ92834 1020 aaKnown RBP27.07■■□□□ 1.92
PDLIM3-203ENST00000284771 GCC1Q96CN9 775 aa27.06■■□□□ 1.92
PDLIM3-203ENST00000284771 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.06■■□□□ 1.92
PDLIM3-203ENST00000284771 CENPQQ7L2Z9 268 aaPredicted RBP27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 C2CD5Q86YS7 1000 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 EYA2O00167 538 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 RPS8P62241 208 aaKnown RBP27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 TAF7LQ5H9L4 462 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 LDHAL6AQ6ZMR3 332 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 SLC51AQ86UW1 340 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 CDC5LQ99459 802 aaKnown RBP27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 RIPOR2Q9Y4F9 1068 aa27.05■■□□□ 1.92
PDLIM3-203ENST00000284771 H0YIN7 160 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 APBB1O00213 710 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 SASH1O94885 1247 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 NPR1P16066 1061 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 KCNA3P22001 575 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 RBM17Q96I25 401 aaKnown RBP27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 SPEF2Q9C093 1822 aa27.04■■□□□ 1.92
PDLIM3-203ENST00000284771 GRAPQ13588 217 aa27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 ANKRD18AQ8IVF6 992 aa27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 GRAPLQ8TC17 118 aaPredicted RBP27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 MASTLQ96GX5 879 aa27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 CRAMP1Q96RY5 1269 aa27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 LRP5O75197 1615 aa27.03■■□□□ 1.92
PDLIM3-203ENST00000284771 KIAA1551Q9HCM1 1747 aa27.02■■□□□ 1.92
PDLIM3-203ENST00000284771 G3BP1Q13283 466 aaKnown RBP eCLIP27.02■■□□□ 1.92
PDLIM3-203ENST00000284771 A0A0G2JLW4 131 aa27.01■■□□□ 1.92
PDLIM3-203ENST00000284771 CIAO1O76071 339 aa27.01■■□□□ 1.92
PDLIM3-203ENST00000284771 IGHMBP2P38935 993 aaKnown RBP27.01■■□□□ 1.92
PDLIM3-203ENST00000284771 BSDC1Q9NW68 430 aaPredicted RBP27.01■■□□□ 1.92
PDLIM3-203ENST00000284771 PPP1R1BQ9UD71 204 aaPredicted RBP27.01■■□□□ 1.92
PDLIM3-203ENST00000284771 DPEP1P16444 411 aa27.01■■□□□ 1.91
PDLIM3-203ENST00000284771 MPHOSPH8Q99549 860 aa27.01■■□□□ 1.91
PDLIM3-203ENST00000284771 FBXO3Q9UK99 471 aa27.01■■□□□ 1.91
PDLIM3-203ENST00000284771 RHPN1Q8TCX5 695 aa27■■□□□ 1.91
PDLIM3-203ENST00000284771 ZNF622Q969S3 477 aaKnown RBP eCLIP27■■□□□ 1.91
PDLIM3-203ENST00000284771 CD2APQ9Y5K6 639 aa27■■□□□ 1.91
PDLIM3-203ENST00000284771 SMARCA5O60264 1052 aaPredicted RBP26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 RAB11FIP3O75154 756 aa26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 TGFB2P61812 414 aa26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 HSP90AB4PQ58FF6 505 aa26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 ANKRD45Q5TZF3 282 aa26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 STYK1Q6J9G0 422 aa26.99■■□□□ 1.91
PDLIM3-203ENST00000284771 CNNM1Q9NRU3 951 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms