RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CLUL1Q15846 466 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 BCAP29Q9UHQ4 241 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 SRGAP1Q7Z6B7 1085 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 GLRX3O76003 335 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 MCM6Q14566 821 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 TTF1Q15361 905 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 ZHX1Q9UKY1 873 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 METTL24Q5JXM2 366 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 HAUS8Q9BT25 410 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 ANKIB1Q9P2G1 1089 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 ZNF213O14771 459 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 CUX1P39880 1505 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 IFIT1P09914 478 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 KRT83P78385 493 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 IRX4P78413 519 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 NBPF11Q86T75 865 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 FSIP1Q8NA03 581 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 TRIM47Q96LD4 638 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 TAOK1Q7L7X3 1001 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 ANKRD24Q8TF21 1146 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 NKIRAS1Q9NYS0 192 aa15.82■□□□□ 0.12
CCDC88A-201ENST00000263630 UVSSAQ2YD98 709 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 ZNF428Q96B54 188 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 RBM28Q9NW13 759 aaKnown RBP15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 INF2Q27J81 1249 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 KIF1BPQ96EK5 621 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 POLA1P09884 1462 aaPredicted RBP15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 KRT86O43790 486 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 BMP15O95972 392 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 CCDC62Q6P9F0 684 aa15.81■□□□□ 0.12
CCDC88A-201ENST00000263630 ZMAT2Q96NC0 199 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 ADCY5O95622 1261 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 VAV2P52735 878 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 N4BP3O15049 544 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 EEF2P13639 858 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 GKAP1Q5VSY0 366 aaPredicted RBP15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 HDAC9Q9UKV0 1011 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 CETN3O15182 167 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 PPP1R7Q15435 360 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 RANBP6O60518 1105 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 PLCD3Q8N3E9 789 aa15.8■□□□□ 0.12
CCDC88A-201ENST00000263630 FCHSD2O94868 740 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 INPP1P49441 399 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 PLCB3Q01970 1234 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 KCNK9Q9NPC2 374 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 DNAJC8O75937 253 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 IDEP14735 1019 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 HSPA1LP34931 641 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 PDE4BQ07343 736 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 CCDC102BQ68D86 513 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 PSPC1Q8WXF1 523 aaKnown RBP15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 BTBD11A6QL63 1104 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 BUB1BO60566 1050 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 UBASH3AP57075 661 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 TAF12Q16514 161 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 DACT3Q96B18 629 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 ZPR1O75312 459 aa15.79■□□□□ 0.12
CCDC88A-201ENST00000263630 SPAG1Q07617 926 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 FAM76AQ8TAV0 307 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 MIER3Q7Z3K6 550 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 B4DLN1 442 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 MRPL12P52815 198 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 RAB11FIP4Q86YS3 637 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 ATP6V0A2Q9Y487 856 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 BICDL2A1A5D9 508 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 XPCQ01831 940 aaPredicted RBP15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 CKAP2LQ8IYA6 745 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 TRIM35Q9UPQ4 493 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 ZEB2O60315 1214 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 PDS5BQ9NTI5 1447 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 SLC5A1P13866 664 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 PRKAR2BP31323 418 aa15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.78■□□□□ 0.12
CCDC88A-201ENST00000263630 WDR46O15213 610 aaKnown RBP15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 BICDL1Q6ZP65 573 aa15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 TOM1L2Q6ZVM7 507 aa15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 PAXIP1Q6ZW49 1069 aaPredicted RBP15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 NBPF7P0C2Y1 421 aaPredicted RBP15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 TCP11L2Q8N4U5 519 aa15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 MRVI1Q9Y6F6 885 aa15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 RIOK3O14730 519 aaKnown RBP15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 ZSCAN16Q9H4T2 348 aaPredicted RBP15.77■□□□□ 0.12
CCDC88A-201ENST00000263630 IFIT3O14879 490 aaKnown RBP15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 GIGYF1O75420 1035 aaPredicted RBP15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 STAT6P42226 847 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 CALCOCO2Q13137 446 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 MAP3K21Q5TCX8 1036 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 ANKFY1Q9P2R3 1169 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 A0A1B0GUL7 405 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 UBE2HP62256 183 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 NUTM2GQ5VZR2 741 aa15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 STK10O94804 968 aaKnown RBP15.77■□□□□ 0.11
CCDC88A-201ENST00000263630 BACH2Q9BYV9 841 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 POTEDQ86YR6 584 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 CCDC26Q8TAB7 109 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 MMRN2Q9H8L6 949 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 FLIIQ13045 1269 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 ZNF365Q70YC5 407 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 RASSF4Q9H2L5 321 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms