RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 STAP2Q9UGK3 403 aa27.76■■■□□ 2.03
CDX1-201ENST00000231656 SH3TC1Q8TE82 1336 aa27.75■■■□□ 2.03
CDX1-201ENST00000231656 MX1P20591 662 aa27.74■■■□□ 2.03
CDX1-201ENST00000231656 DEFB132Q7Z7B7 95 aa27.74■■■□□ 2.03
CDX1-201ENST00000231656 SETDB2Q96T68 719 aa27.74■■■□□ 2.03
CDX1-201ENST00000231656 COL24A1Q17RW2 1714 aa27.74■■■□□ 2.03
CDX1-201ENST00000231656 EIF5BO60841 1220 aaKnown RBP27.73■■■□□ 2.03
CDX1-201ENST00000231656 PA2G4Q9UQ80 394 aaKnown RBP27.73■■■□□ 2.03
CDX1-201ENST00000231656 GYS1P13807 737 aa27.73■■■□□ 2.03
CDX1-201ENST00000231656 RFX5P48382 616 aaPredicted RBP27.72■■■□□ 2.03
CDX1-201ENST00000231656 RHPN1Q8TCX5 695 aa27.72■■■□□ 2.03
CDX1-201ENST00000231656 TBC1D2Q9BYX2 928 aa27.72■■■□□ 2.03
CDX1-201ENST00000231656 CHMP3Q9Y3E7 222 aa27.72■■■□□ 2.03
CDX1-201ENST00000231656 DDX60Q8IY21 1712 aaKnown RBP27.71■■■□□ 2.03
CDX1-201ENST00000231656 HSP90AB4PQ58FF6 505 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 CCDC125Q86Z20 511 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 KIF1BPQ96EK5 621 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 AOX1Q06278 1338 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 PDE8AO60658 829 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 CSF1RP07333 972 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 NUTM1Q86Y26 1132 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 KLHDC4Q8TBB5 520 aa27.71■■■□□ 2.03
CDX1-201ENST00000231656 LAMB2P55268 1798 aa27.7■■■□□ 2.03
CDX1-201ENST00000231656 COL23A1Q86Y22 540 aaPredicted RBP27.7■■■□□ 2.02
CDX1-201ENST00000231656 FLAD1Q8NFF5 587 aa27.7■■■□□ 2.02
CDX1-201ENST00000231656 ANO8Q9HCE9 1232 aaPredicted RBP27.7■■■□□ 2.02
CDX1-201ENST00000231656 IL1RAPL2Q9NP60 686 aa27.7■■■□□ 2.02
CDX1-201ENST00000231656 CTSWP56202 376 aa27.69■■■□□ 2.02
CDX1-201ENST00000231656 PTPN12Q05209 780 aaKnown RBP27.69■■■□□ 2.02
CDX1-201ENST00000231656 TSHZ3Q63HK5 1081 aa27.69■■■□□ 2.02
CDX1-201ENST00000231656 COPRSQ9NQ92 184 aa27.69■■■□□ 2.02
CDX1-201ENST00000231656 HCLS1P14317 486 aaPredicted RBP27.68■■■□□ 2.02
CDX1-201ENST00000231656 NFIXQ14938 502 aa27.68■■■□□ 2.02
CDX1-201ENST00000231656 TTLL11Q8NHH1 800 aa27.68■■■□□ 2.02
CDX1-201ENST00000231656 NYXQ9GZU5 481 aa27.68■■■□□ 2.02
CDX1-201ENST00000231656 PNPLA7Q6ZV29 1317 aa27.68■■■□□ 2.02
CDX1-201ENST00000231656 SLC15A2Q16348 729 aa27.67■■■□□ 2.02
CDX1-201ENST00000231656 ERFEQ4G0M1 354 aa27.67■■■□□ 2.02
CDX1-201ENST00000231656 NBPF5PQ86XG9 351 aaPredicted RBP27.67■■■□□ 2.02
CDX1-201ENST00000231656 KIF2CQ99661 725 aa27.67■■■□□ 2.02
CDX1-201ENST00000231656 HSP90B1P14625 803 aaKnown RBP27.66■■■□□ 2.02
CDX1-201ENST00000231656 OS9Q13438 667 aaPredicted RBP27.66■■■□□ 2.02
CDX1-201ENST00000231656 CASC1Q6TDU7 716 aa27.66■■■□□ 2.02
CDX1-201ENST00000231656 SIL1Q9H173 461 aa27.66■■■□□ 2.02
CDX1-201ENST00000231656 CARMIL3Q8ND23 1372 aa27.66■■■□□ 2.02
CDX1-201ENST00000231656 CCDC85AQ96PX6 553 aaPredicted RBP27.65■■■□□ 2.02
CDX1-201ENST00000231656 G3BP1Q13283 466 aaKnown RBP eCLIP27.65■■■□□ 2.02
CDX1-201ENST00000231656 NBR1Q14596 966 aa27.65■■■□□ 2.02
CDX1-201ENST00000231656 TPTE2Q6XPS3 522 aa27.65■■■□□ 2.02
CDX1-201ENST00000231656 STK32BQ9NY57 414 aa27.65■■■□□ 2.02
CDX1-201ENST00000231656 GTF2E1P29083 439 aaPredicted RBP27.64■■■□□ 2.02
CDX1-201ENST00000231656 CCDC57Q2TAC2 916 aa27.64■■■□□ 2.02
CDX1-201ENST00000231656 QSER1Q2KHR3 1735 aa27.63■■■□□ 2.01
CDX1-201ENST00000231656 TM4SF1P30408 202 aa27.63■■■□□ 2.01
CDX1-201ENST00000231656 ERC1Q8IUD2 1116 aa27.63■■■□□ 2.01
CDX1-201ENST00000231656 GREM2Q9H772 168 aa27.63■■■□□ 2.01
CDX1-201ENST00000231656 AK9Q5TCS8 1911 aa27.63■■■□□ 2.01
CDX1-201ENST00000231656 CASZ1Q86V15 1759 aa27.62■■■□□ 2.01
CDX1-201ENST00000231656 IFIT5Q13325 482 aaKnown RBP27.62■■■□□ 2.01
CDX1-201ENST00000231656 SLC10A5Q5PT55 438 aa27.62■■■□□ 2.01
CDX1-201ENST00000231656 ABCC12Q96J65 1359 aa27.62■■■□□ 2.01
CDX1-201ENST00000231656 ZNF594Q96JF6 807 aaPredicted RBP27.61■■■□□ 2.01
CDX1-201ENST00000231656 USP26Q9BXU7 913 aa27.61■■■□□ 2.01
CDX1-201ENST00000231656 SASH1O94885 1247 aa27.6■■■□□ 2.01
CDX1-201ENST00000231656 ITGA6P23229 1130 aa27.6■■■□□ 2.01
CDX1-201ENST00000231656 PI4K2BQ8TCG2 481 aa27.6■■■□□ 2.01
CDX1-201ENST00000231656 NLGN1Q8N2Q7 840 aa27.6■■■□□ 2.01
CDX1-201ENST00000231656 SNX21Q969T3 373 aa27.6■■■□□ 2.01
CDX1-201ENST00000231656 CCDC152Q4G0S7 254 aa27.58■■■□□ 2.01
CDX1-201ENST00000231656 ANKRD18BA2A2Z9 1011 aa27.58■■■□□ 2
CDX1-201ENST00000231656 ERC2O15083 957 aa27.58■■■□□ 2
CDX1-201ENST00000231656 CNBD1Q8NA66 436 aa27.58■■■□□ 2
CDX1-201ENST00000231656 NPHP1O15259 732 aa27.57■■■□□ 2
CDX1-201ENST00000231656 DDR1Q08345 913 aa27.57■■■□□ 2
CDX1-201ENST00000231656 C3orf67Q6ZVT6 689 aa27.57■■■□□ 2
CDX1-201ENST00000231656 ATG9AQ7Z3C6 839 aa27.57■■■□□ 2
CDX1-201ENST00000231656 CCDC24Q8N4L8 307 aa27.57■■■□□ 2
CDX1-201ENST00000231656 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.57■■■□□ 2
CDX1-201ENST00000231656 EYA2O00167 538 aa27.56■■■□□ 2
CDX1-201ENST00000231656 POLRMTO00411 1230 aaKnown RBP27.56■■■□□ 2
CDX1-201ENST00000231656 SERPINB2P05120 415 aa27.56■■■□□ 2
CDX1-201ENST00000231656 TAF7LQ5H9L4 462 aa27.56■■■□□ 2
CDX1-201ENST00000231656 CLASRPQ8N2M8 674 aaKnown RBP27.56■■■□□ 2
CDX1-201ENST00000231656 ANTXR1Q9H6X2 564 aa27.56■■■□□ 2
CDX1-201ENST00000231656 RTL9Q8NET4 1388 aa27.56■■■□□ 2
CDX1-201ENST00000231656 TRIM6-TRIM34B2RNG4 842 aa27.55■■■□□ 2
CDX1-201ENST00000231656 REC8O95072 547 aa27.55■■■□□ 2
CDX1-201ENST00000231656 SF3B3Q15393 1217 aaKnown RBP27.55■■■□□ 2
CDX1-201ENST00000231656 LRRC24Q50LG9 513 aa27.55■■■□□ 2
CDX1-201ENST00000231656 HSCBQ8IWL3 235 aa27.55■■■□□ 2
CDX1-201ENST00000231656 TTC41PQ6P2S7 1318 aa27.55■■■□□ 2
CDX1-201ENST00000231656 CIAO1O76071 339 aa27.55■■■□□ 2
CDX1-201ENST00000231656 CHMLP26374 656 aa27.55■■■□□ 2
CDX1-201ENST00000231656 PRR5LQ6MZQ0 368 aa27.55■■■□□ 2
CDX1-201ENST00000231656 RILPL2Q969X0 211 aa27.55■■■□□ 2
CDX1-201ENST00000231656 PUS3Q9BZE2 481 aaKnown RBP27.55■■■□□ 2
CDX1-201ENST00000231656 FBXO3Q9UK99 471 aa27.55■■■□□ 2
CDX1-201ENST00000231656 NLRP3Q96P20 1036 aa27.54■■■□□ 2
CDX1-201ENST00000231656 ESYT1Q9BSJ8 1104 aa27.54■■■□□ 2
CDX1-201ENST00000231656 IL15P40933 162 aaPredicted RBP27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms