RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SUSD4Q5VX71 490 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 CCDC85AQ96PX6 553 aaPredicted RBP22.17■■□□□ 1.14
VIM-201ENST00000224237 UTP14AQ9BVJ6 771 aaKnown RBP22.17■■□□□ 1.14
VIM-201ENST00000224237 NIP7Q9Y221 180 aaKnown RBP eCLIP22.17■■□□□ 1.14
VIM-201ENST00000224237 AK9Q5TCS8 1911 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 EYA2O00167 538 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 IFIT5Q13325 482 aaKnown RBP22.17■■□□□ 1.14
VIM-201ENST00000224237 TNNI3KQ59H18 835 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 SRP68Q9UHB9 627 aaKnown RBP22.17■■□□□ 1.14
VIM-201ENST00000224237 FPGT-TNNI3KV9GXZ4 949 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 RBM25P49756 843 aaKnown RBP22.16■■□□□ 1.14
VIM-201ENST00000224237 ATG9AQ7Z3C6 839 aa22.16■■□□□ 1.14
VIM-201ENST00000224237 CNTROBQ8N137 903 aa22.16■■□□□ 1.14
VIM-201ENST00000224237 CCDC8Q9H0W5 538 aaPredicted RBP22.16■■□□□ 1.14
VIM-201ENST00000224237 RTCBQ9Y3I0 505 aaKnown RBP22.16■■□□□ 1.14
VIM-201ENST00000224237 TTLL11Q8NHH1 800 aa22.15■■□□□ 1.14
VIM-201ENST00000224237 PHF14O94880 888 aa22.15■■□□□ 1.14
VIM-201ENST00000224237 HSP90B1P14625 803 aaKnown RBP22.15■■□□□ 1.14
VIM-201ENST00000224237 ERICH6Q7L0X2 663 aa22.15■■□□□ 1.14
VIM-201ENST00000224237 ZNF594Q96JF6 807 aaPredicted RBP22.15■■□□□ 1.14
VIM-201ENST00000224237 BCL2L12Q9HB09 334 aa22.15■■□□□ 1.14
VIM-201ENST00000224237 LAMB2P55268 1798 aa22.14■■□□□ 1.14
VIM-201ENST00000224237 TAF7LQ5H9L4 462 aa22.14■■□□□ 1.13
VIM-201ENST00000224237 USPL1Q5W0Q7 1092 aa22.14■■□□□ 1.13
VIM-201ENST00000224237 GPR108Q9NPR9 543 aa22.14■■□□□ 1.13
VIM-201ENST00000224237 NARFQ9UHQ1 456 aa22.14■■□□□ 1.13
VIM-201ENST00000224237 TLR7Q9NYK1 1049 aaKnown RBP22.13■■□□□ 1.13
VIM-201ENST00000224237 C4AP0C0L4 1744 aa22.13■■□□□ 1.13
VIM-201ENST00000224237 REC8O95072 547 aa22.13■■□□□ 1.13
VIM-201ENST00000224237 NTSR2O95665 410 aa22.13■■□□□ 1.13
VIM-201ENST00000224237 LRRC24Q50LG9 513 aa22.13■■□□□ 1.13
VIM-201ENST00000224237 ARHGEF1Q92888 912 aaKnown RBP22.13■■□□□ 1.13
VIM-201ENST00000224237 ANKRD18BA2A2Z9 1011 aa22.12■■□□□ 1.13
VIM-201ENST00000224237 ITGA6P23229 1130 aa22.12■■□□□ 1.13
VIM-201ENST00000224237 CHMLP26374 656 aa22.12■■□□□ 1.13
VIM-201ENST00000224237 PROM2Q8N271 834 aa22.12■■□□□ 1.13
VIM-201ENST00000224237 GREM2Q9H772 168 aa22.12■■□□□ 1.13
VIM-201ENST00000224237 DDX60Q8IY21 1712 aaKnown RBP22.11■■□□□ 1.13
VIM-201ENST00000224237 HCLS1P14317 486 aaPredicted RBP22.11■■□□□ 1.13
VIM-201ENST00000224237 SLC27A3Q5K4L6 730 aa22.11■■□□□ 1.13
VIM-201ENST00000224237 BICDL1Q6ZP65 573 aa22.11■■□□□ 1.13
VIM-201ENST00000224237 DBNLQ9UJU6 430 aaKnown RBP22.11■■□□□ 1.13
VIM-201ENST00000224237 ZPR1O75312 459 aa22.11■■□□□ 1.13
VIM-201ENST00000224237 MAP4K4O95819 1239 aaPredicted RBP22.11■■□□□ 1.13
VIM-201ENST00000224237 TBC1D9BQ66K14 1250 aa22.11■■□□□ 1.13
VIM-201ENST00000224237 TXNRD1Q16881 649 aa22.1■■□□□ 1.13
VIM-201ENST00000224237 PUS3Q9BZE2 481 aaKnown RBP22.1■■□□□ 1.13
VIM-201ENST00000224237 ZNF609O15014 1411 aa22.1■■□□□ 1.13
VIM-201ENST00000224237 UBR3Q6ZT12 1888 aa22.09■■□□□ 1.13
VIM-201ENST00000224237 EVI5LQ96CN4 794 aa22.09■■□□□ 1.13
VIM-201ENST00000224237 ESYT1Q9BSJ8 1104 aa22.09■■□□□ 1.13
VIM-201ENST00000224237 DAXXQ9UER7 740 aaPredicted RBP22.09■■□□□ 1.13
VIM-201ENST00000224237 HMGB2P26583 209 aaKnown RBP22.09■■□□□ 1.13
VIM-201ENST00000224237 CEP126Q9P2H0 1117 aa22.09■■□□□ 1.13
VIM-201ENST00000224237 APBA3O96018 575 aa22.08■■□□□ 1.13
VIM-201ENST00000224237 BECN1Q14457 450 aa22.08■■□□□ 1.13
VIM-201ENST00000224237 LRP5O75197 1615 aa22.08■■□□□ 1.12
VIM-201ENST00000224237 COL24A1Q17RW2 1714 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 ATP5JP18859 108 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 USP26Q9BXU7 913 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.07■■□□□ 1.12
VIM-201ENST00000224237 ADRA2BP18089 450 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 TRAPPC3LQ5T215 181 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 LDHAL6AQ6ZMR3 332 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 DBNDD2Q9BQY9 259 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 AKAP2Q9Y2D5 859 aa22.07■■□□□ 1.12
VIM-201ENST00000224237 RTL9Q8NET4 1388 aa22.06■■□□□ 1.12
VIM-201ENST00000224237 TNS1Q9HBL0 1735 aaKnown RBP22.06■■□□□ 1.12
VIM-201ENST00000224237 RFC4P35249 363 aa22.06■■□□□ 1.12
VIM-201ENST00000224237 CCDC152Q4G0S7 254 aa22.06■■□□□ 1.12
VIM-201ENST00000224237 BOLA2Q9H3K6 86 aa22.06■■□□□ 1.12
VIM-201ENST00000224237 NEUROD6Q96NK8 337 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 RIPOR2Q9Y4F9 1068 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 RIC1Q4ADV7 1423 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 A0A1B0GUL7 405 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 SETDB2Q96T68 719 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 NYXQ9GZU5 481 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 CNNM1Q9NRU3 951 aa22.05■■□□□ 1.12
VIM-201ENST00000224237 ERFEQ4G0M1 354 aa22.04■■□□□ 1.12
VIM-201ENST00000224237 PLSCR1O15162 318 aa22.03■■□□□ 1.12
VIM-201ENST00000224237 TIMM10P62072 90 aa22.03■■□□□ 1.12
VIM-201ENST00000224237 HIP1O00291 1037 aa22.03■■□□□ 1.12
VIM-201ENST00000224237 EPB41L2O43491 1005 aaKnown RBP22.03■■□□□ 1.12
VIM-201ENST00000224237 METTL24Q5JXM2 366 aa22.03■■□□□ 1.12
VIM-201ENST00000224237 DIAPH3Q9NSV4 1193 aa22.03■■□□□ 1.12
VIM-201ENST00000224237 ABCC12Q96J65 1359 aa22.02■■□□□ 1.12
VIM-201ENST00000224237 KIF2CQ99661 725 aa22.02■■□□□ 1.12
VIM-201ENST00000224237 GTF2E1P29083 439 aaPredicted RBP22.01■■□□□ 1.11
VIM-201ENST00000224237 ZNF827Q17R98 1081 aa22.01■■□□□ 1.11
VIM-201ENST00000224237 C3orf67Q6ZVT6 689 aa22.01■■□□□ 1.11
VIM-201ENST00000224237 RUFY2Q8WXA3 655 aa22.01■■□□□ 1.11
VIM-201ENST00000224237 SGSM2O43147 1006 aa22■■□□□ 1.11
VIM-201ENST00000224237 SSFA2P28290 1259 aa22■■□□□ 1.11
VIM-201ENST00000224237 HAUS7Q99871 368 aa22■■□□□ 1.11
VIM-201ENST00000224237 ANO2Q9NQ90 1003 aa22■■□□□ 1.11
VIM-201ENST00000224237 MROH5Q6ZUA9 1318 aa22■■□□□ 1.11
VIM-201ENST00000224237 SLC10A5Q5PT55 438 aa22■■□□□ 1.11
VIM-201ENST00000224237 CCDC24Q8N4L8 307 aa22■■□□□ 1.11
VIM-201ENST00000224237 SEC31BQ9NQW1 1179 aa22■■□□□ 1.11
VIM-201ENST00000224237 SLC4A3P48751 1232 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms