RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PRSS16Q9NQE7 514 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 UFSP2Q9NUQ7 469 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 COX16Q9P0S2 106 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TRBV23OR9-2A0A075B6M9 112 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SERTM2A0A1B0GWG4 89 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 XKRY2A2RUG3 117 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 HSBP1L1C9JCN9 74 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 F5H0A9 414 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 PLRG1O43660 514 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 KRT33AO76009 404 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PAK4O96013 591 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 ADH1BP00325 375 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PDGFBP01127 241 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 HOXC4P09017 264 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 LIMS3P0CW19 117 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 LIMS4P0CW20 117 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TFPIP10646 304 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TRHRP34981 398 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 CSNK1EP49674 416 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 SELENOPP49908 381 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CCR5P51681 352 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CACNG1Q06432 222 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 NFATC2Q13469 925 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 ELAVL3Q14576 367 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 ZNF805Q5CZA5 627 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 LIPJQ5W064 366 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 FAM219BQ5XKK7 198 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 LPCAT3Q6P1A2 487 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 C22orf39Q6P5X5 142 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PXKQ7Z7A4 578 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SIAH3Q8IW03 269 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GPR135Q8IZ08 494 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 OR2A12Q8NGT7 310 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 XAGE5Q8WWM1 108 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 RHOVQ96L33 236 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CDK15Q96Q40 435 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 DUSP26Q9BV47 211 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 BCL2L14Q9BZR8 327 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SLC35D1Q9NTN3 355 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GPATCH2Q9NW75 528 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 OPN4Q9UHM6 478 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CA14Q9ULX7 337 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PLEKHA6Q9Y2H5 1048 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 FAM86C2PA6NEL3 165 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 WWP2O00308 870 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 STK16O75716 305 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 POP7O75817 140 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 OR2F2O95006 317 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 ALDOBP05062 364 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 IL3P08700 152 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 IRF1P10914 325 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SLC25A4P12235 298 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 GABRG2P18507 467 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PAICSP22234 425 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 ELAVL4P26378 380 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 GIFP27352 417 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SLC1A3P43003 542 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PREPP48147 710 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PGDP52209 483 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 ZNF177Q13360 481 aaPredicted RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 SNTB2Q13425 540 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 OR2F1Q13607 317 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 TMEM52BQ4KMG9 183 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 TMEM255AQ5JRV8 349 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 COX20Q5RI15 118 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 DCST1Q5T197 706 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PRAMEF13Q5VWM6 474 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 ADNP2Q6IQ32 1131 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PGBD2Q6P3X8 592 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 TMEM92Q6UXU6 159 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 RABEPKQ7Z6M1 372 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SLC43A2Q8N370 569 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SIDT2Q8NBJ9 832 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 SUMF1Q8NBK3 374 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 OR4F15Q8NGB8 312 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 CXorf40AQ8TE69 158 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 DNASE2BQ8WZ79 361 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 OSTF1Q92882 214 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 HMCESQ96FZ2 354 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 FCRL4Q96PJ5 515 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 ZNF649Q9BS31 505 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PAPOLGQ9BWT3 736 aaKnown RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 FOXQ1Q9C009 403 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 CNTD2Q9H8S5 307 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 A4GALTQ9NPC4 353 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SPATA6Q9NWH7 488 aaPredicted RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 WWOXQ9NZC7 414 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 LRFN1Q9P244 771 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 SPATA2Q9UM82 520 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 A0A0G2JK05 382 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 PRAMEF25A6NGN4 478 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 RFPL4AA6NLU0 287 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 EFCAB7A8K855 629 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 GABRR3A8MPY1 467 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 ZNF891A8MT65 544 aaPredicted RBP4.86□□□□□ -1.63
USP28-213ENST00000544967 RFPL4AL1F8VTS6 287 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 J3QRE1 110 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 DVL2O14641 736 aa4.86□□□□□ -1.63
USP28-213ENST00000544967 FGF16O43320 207 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms