RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SOX14O95416 240 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CXCL10P02778 98 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 LCKP06239 509 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 IMPA1P29218 277 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 ETV3P41162 512 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 EXT1Q16394 746 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 HLA-BQ31612 363 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 FIGNL1Q6PIW4 674 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM64Q6YI46 380 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 CDH26Q8IXH8 852 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR5K2Q8NHB8 316 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 TSACCQ96A04 125 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 HRASLS5Q96KN8 279 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SNX18Q96RF0 628 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 APOOQ9BUR5 198 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 DPCDQ9BVM2 203 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 HIPK2Q9H2X6 1198 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 LOC102723532A0A0G2JNH3 316 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 BEST1O76090 585 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 ALPLP05186 524 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 NFYBP25208 207 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 GDF1P27539 372 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF92Q03936 586 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 KLRB1Q12918 225 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 NFATC4Q14934 902 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 TSSK4Q6SA08 328 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SUMF2Q8NBJ7 301 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 OR9A2Q8NGT5 310 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SPRYD4Q8WW59 207 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 GGHQ92820 318 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 JMJD8Q96S16 334 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 SLC25A19Q9HC21 320 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 B3GAT1Q9P2W7 334 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 DNMT3BQ9UBC3 853 aaKnown RBP7.29□□□□□ -1.24
VPS13D-211ENST00000543710 RASD1Q9Y272 281 aa7.29□□□□□ -1.24
VPS13D-211ENST00000543710 IQCF5A8MTL0 148 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 B4DXG7 233 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 KCNK2O95069 426 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RAB3DO95716 219 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 F3P13726 295 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ARSBP15848 533 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CELP19835 753 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 EFNA3P52797 238 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CTSL3PQ5NE16 218 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SYT6Q5T7P8 510 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 NDUFAF5Q5TEU4 345 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 PARP16Q8N5Y8 322 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 OR51A2Q8NGJ7 313 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 DIO2Q92813 273 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM203Q969S6 136 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 COQ10AQ96MF6 247 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 DPH7Q9BTV6 452 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 JAM3Q9BX67 310 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 IKZF4Q9H2S9 585 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 B3GNT2Q9NY97 397 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CBLCQ9ULV8 474 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 A0A0A6YYH2 397 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 A6NJ64 397 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 J3QRK9 145 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 GABARAPO95166 117 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 IGHG1P01857 330 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CSRP1P21291 193 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RTP2Q5QGT7 225 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CSNK2A3Q8NEV1 391 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 OR9I1Q8NGQ6 314 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RRNAD1Q96FB5 475 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 EGLN1Q9GZT9 426 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ADAM19Q9H013 955 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 VNN3Q9NY84 501 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 BTAF1O14981 1849 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 MYO5AQ9Y4I1 1855 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SPAARA0A1B0GVQ0 90 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CTXN2P0C2S0 81 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 TCEA1P23193 301 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CASP3P42574 277 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RAB1AP62820 205 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SLC35A1P78382 337 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 GFOD2Q3B7J2 385 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 NDUFAF7Q7L592 441 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 FRMD1Q8N878 549 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 OR7G2Q8NG99 324 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 FEVQ99581 238 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CMSS1Q9BQ75 279 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 OCEL1Q9H607 264 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 PLEKHA3Q9HB20 300 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM165Q9HC07 324 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 LRFN1Q9P244 771 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 EMCNQ9ULC0 261 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RNF150Q9ULK6 438 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 FAM96BQ9Y3D0 163 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 PLEKHM1Q9Y4G2 1056 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 EIF4E2O60573 245 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 C1orf105O95561 183 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RAF1P04049 648 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SFTPBP07988 381 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 GIPP09681 153 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 NAT2P11245 290 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SOX18P35713 384 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 EIF1P41567 113 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 STK19P49842 368 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms