RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 AIG1Q9NVV5 245 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 P2RX2Q9UBL9 471 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 TMED7Q9Y3B3 224 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 TLN2Q9Y4G6 2542 aa6.24□□□□□ -1.41
VPS41-208ENST00000448833 RTTNQ86VV8 2226 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 A0A0G2JPF8 293 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 A8MVM7 634 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 HNRNPCL2B2RXH8 293 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SHISA9B4DS77 424 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 HNRNPCL3B7ZW38 293 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 INAFM1C9JVW0 142 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 HNRNPCL1O60812 293 aaKnown RBP6.23□□□□□ -1.41
VPS41-208ENST00000448833 SLC22A3O75751 556 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 RAD51DO75771 328 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 KRT33AO76009 404 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 THBS1P07996 1170 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ZCCHC18P0CG32 403 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 HNRNPCL4P0DMR1 293 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 BGNP21810 368 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CD40P25942 277 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 TACR3P29371 465 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 MPGP29372 298 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 APOBEC3AP31941 199 aaPredicted RBP6.23□□□□□ -1.41
VPS41-208ENST00000448833 CDKN1AP38936 164 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 RNF144AP50876 292 aaPredicted RBP6.23□□□□□ -1.41
VPS41-208ENST00000448833 FABP6P51161 128 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 NUDT6P53370 316 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CRISP3P54108 245 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 UFM1P61960 85 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 PHC1P78364 1004 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SLC17A1Q14916 467 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 GABRA6Q16445 453 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SYPL1Q16563 259 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 LIN52Q52LA3 116 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 TNFAIP8L3Q5GJ75 292 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CEP85LQ5SZL2 805 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 WBP2NLQ6ICG8 309 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 C5orf46Q6UWT4 87 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CASP12Q6UXS9 341 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 RNF130Q86XS8 419 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CLEC4FQ8N1N0 589 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 MUC15Q8N387 334 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 KBTBD8Q8NFY9 601 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 OR52N5Q8NH56 324 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SPATA3Q8NHX4 192 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CNOT9Q92600 299 aaKnown RBP6.23□□□□□ -1.41
VPS41-208ENST00000448833 SLC35B4Q969S0 331 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 TMEM45BQ96B21 275 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ZG16BQ96DA0 208 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 BOD1Q96IK1 185 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ITCHQ96J02 903 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ARL5BQ96KC2 179 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SORT1Q99523 831 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 KCNS3Q9BQ31 491 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 INPP5KQ9BT40 448 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 PARD6BQ9BYG5 372 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 C20orf27Q9GZN8 174 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ADAM19Q9H013 955 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SLC38A1Q9H2H9 487 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 TMEM45AQ9NWC5 275 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 NKIRAS1Q9NYS0 192 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 OSGIN1Q9UJX0 560 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 IFT52Q9Y366 437 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 FLVCR1Q9Y5Y0 555 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 SLC25A15Q9Y619 301 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 PLCE1Q9P212 2302 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 ABCA1O95477 2261 aa6.23□□□□□ -1.41
VPS41-208ENST00000448833 CSPG4Q6UVK1 2322 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 FN1P02751 2386 aaKnown RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 CDHR4A6H8M9 788 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 H7C417 338 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 M0R1B8 84 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CD5LO43866 347 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 OR2T1O43869 369 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 SSX4O60224 188 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 RAMP1O60894 148 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CD8AP01732 235 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 IGHV3-9P01782 118 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 IGHV4-39P01824 125 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 TFPTP0C1Z6 253 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 SLC25A16P16260 332 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 NCF2P19878 526 aaPredicted RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 CCNA2P20248 432 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 RPS4Y1P22090 263 aaKnown RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 ACVR1BP36896 505 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CRATP43155 626 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 ZNF83P51522 516 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 SH3BGRP55822 239 aaPredicted RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 IRX1P78414 480 aaPredicted RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 BST1Q10588 318 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 EPS8Q12929 822 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CEACAM7Q14002 265 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 C3orf36Q3SXR2 165 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 PDCD4Q53EL6 469 aaKnown RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 OTUD3Q5T2D3 398 aaPredicted RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 MRPL2Q5T653 305 aaKnown RBP6.22□□□□□ -1.41
VPS41-208ENST00000448833 RNF220Q5VTB9 566 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 PRAMEF8Q5VWM4 474 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 PRAMEF7Q5VXH5 474 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 NXNQ6DKJ4 435 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms