RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 OR2T33Q8NG76 320 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 STK35Q8TDR2 534 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 RELTQ969Z4 430 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 ZBTB8AQ96BR9 441 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 ADNPQ9H2P0 1102 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 UBQLN3Q9H347 655 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 TUBA8Q9NY65 449 aaPredicted RBP16.82■□□□□ 0.28
CLN3-206ENST00000360019 A0A087WZY1 265 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 TRIM64A6NGJ6 449 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 FAM47E-STBD1D6RA91 191 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 SLC1A7O00341 560 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 BHLHE40O14503 412 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 CBR3O75828 277 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 BGLAPP02818 100 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 ASAH2BP0C7U1 165 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 SMIM18P0DKX4 95 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 BMP7P18075 431 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 CRHBPP24387 322 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 EFNB1P98172 346 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 PGGHGQ32M88 737 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 KCTD21Q4G0X4 260 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 C1orf140Q5VVS0 124 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 PTCHD4Q6ZW05 846 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 MDS2Q8NDY4 140 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 SLC39A7Q92504 469 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 NANSQ9NR45 359 aa16.82■□□□□ 0.28
CLN3-206ENST00000360019 MED12Q93074 2177 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 CDK2AP1O14519 115 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 ZNF208O43345 1280 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 PRKYO43930 277 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 ZIC3O60481 467 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 ADH6P28332 368 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 PCYT1AP49585 367 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 FOXO1Q12778 655 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 TMEM154Q6P9G4 183 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 BPIFB6Q8NFQ5 453 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 OR52L1Q8NGH7 329 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 ZNF566Q969W8 418 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 ARL5BQ96KC2 179 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 IL4I1Q96RQ9 567 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 UBL7Q96S82 380 aaPredicted RBP16.81■□□□□ 0.28
CLN3-206ENST00000360019 POLDIP3Q9BY77 421 aaKnown RBP16.81■□□□□ 0.28
CLN3-206ENST00000360019 YTHDF1Q9BYJ9 559 aaKnown RBP16.81■□□□□ 0.28
CLN3-206ENST00000360019 RNF32Q9H0A6 362 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 RPH3AQ9Y2J0 694 aaPredicted RBP16.81■□□□□ 0.28
CLN3-206ENST00000360019 SSUH2Q9Y2M2 353 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 KCNMB2Q9Y691 235 aa16.81■□□□□ 0.28
CLN3-206ENST00000360019 XPNPEP2O43895 674 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 RFPL3SP0C7P2 107 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 HK1P19367 917 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 EIF1P41567 113 aaKnown RBP16.8■□□□□ 0.28
CLN3-206ENST00000360019 CDH15P55291 814 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 RBM48Q5RL73 367 aaKnown RBP16.8■□□□□ 0.28
CLN3-206ENST00000360019 FAM69AQ5T7M9 428 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 GTPBP8Q8N3Z3 284 aaPredicted RBP16.8■□□□□ 0.28
CLN3-206ENST00000360019 TCEANCQ8N8B7 351 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 OR2M7Q8NG81 312 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 OR8J1Q8NGP2 316 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 TRUB1Q8WWH5 349 aaKnown RBP16.8■□□□□ 0.28
CLN3-206ENST00000360019 FKRPQ9H9S5 495 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 ZNF229Q9UJW7 825 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 DKKL1Q9UK85 242 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 HIF3AQ9Y2N7 669 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 MPZL2O60487 215 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 NDUFB2O95178 105 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 MAP2K6P52564 334 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 MLLT10P55197 1068 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 CXCR4P61073 352 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 SNRPGP62308 76 aaKnown RBP16.8■□□□□ 0.28
CLN3-206ENST00000360019 SNAPC1Q16533 368 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 TMEM44Q2T9K0 475 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 C5orf46Q6UWT4 87 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 LNX2Q8N448 690 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 ATP6V1C2Q8NEY4 427 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 SGCDQ92629 289 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 HAS2Q92819 552 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 FAM173AQ9BQD7 235 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 IFT27Q9BW83 186 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 ZFP64Q9NPA5 681 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 KLHL1Q9NR64 748 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 SEC14L4Q9UDX3 406 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 SCOCQ9UIL1 159 aa16.8■□□□□ 0.28
CLN3-206ENST00000360019 MCIDASD6RGH6 385 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 FTCDNL1E5RQL4 147 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 H3BML4 177 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 SURF4O15260 269 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 AHSA1O95433 338 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 MT-ATP6P00846 226 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 TSPAN19P0C672 248 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 CCDC159P0C7I6 412 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 PEPDP12955 493 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 SRD5A2P31213 254 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 TEKQ02763 1124 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 BLMHQ13867 455 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 SYT14P1Q58G82 188 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 C3orf33Q6P1S2 294 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 IGFN1Q86VF2 1251 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 SULF2Q8IWU5 870 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 MOSPD2Q8NHP6 518 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 DDIT4LQ96D03 193 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms