RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 EPS8Q12929 822 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 TSC22D1Q15714 1073 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 LIN52Q52LA3 116 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 FBXW9Q5XUX1 488 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ALKBH2Q6NS38 261 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 DNAJC14Q6Y2X3 702 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 MAVSQ7Z434 540 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 HMGN2P46Q86SG4 172 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 APH1AQ96BI3 265 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF775Q96BV0 537 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 C7orf26Q96N11 449 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 NAA11Q9BSU3 229 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ADAM19Q9H013 955 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 RAD21L1Q9H4I0 556 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 CACYBPQ9HB71 228 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 PARPBPQ9NWS1 579 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF232Q9UNY5 417 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 DSPPQ9NZW4 1301 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 FAM234BA2RU67 622 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 CDHR4A6H8M9 788 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 AP3D1O14617 1153 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 LYZL6O75951 148 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 TFPTP0C1Z6 253 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 IGHV1-2P23083 117 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 TACR3P29371 465 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 MRPL19P49406 292 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 DSTNP60981 165 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 LARS2Q15031 903 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 PPA1Q15181 289 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 EPGNQ6UW88 154 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 OR52P1PQ8NH57 321 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 FBXW5Q969U6 566 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 COX4I2Q96KJ9 171 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 Q96MF0 132 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 OR52B2Q96RD2 323 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 OR11A1Q9GZK7 315 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC6A13Q9NSD5 602 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 USH1CQ9Y6N9 552 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 PLCE1Q9P212 2302 aa16.86■□□□□ 0.29
CCDC28A-203ENST00000617445 CSPG4Q6UVK1 2322 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 A0A0G2JPF8 293 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 HNRNPCL2B2RXH8 293 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 HNRNPCL3B7ZW38 293 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 HNRNPCL1O60812 293 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 MRPL33O75394 65 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 THBS1P07996 1170 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 HNRNPCL4P0DMR1 293 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 ETFAP13804 333 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 STX1BP61266 288 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 COPZ1P61923 177 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 RPS4XP62701 263 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 MAPK11Q15759 364 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 C1QTNF12Q5T7M4 302 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 RNF220Q5VTB9 566 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 PRAMEF8Q5VWM4 474 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 PRAMEF7Q5VXH5 474 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 PAQR6Q6TCH4 344 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 CLEC9AQ6UXN8 241 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 UBE2J2Q8N2K1 259 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF433Q8N7K0 673 aaPredicted RBP16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC38A5Q8WUX1 472 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 RADILQ96JH8 1075 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 PIF1Q9H611 641 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 ASB6Q9NWX5 421 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 IFT52Q9Y366 437 aa16.85■□□□□ 0.29
CCDC28A-203ENST00000617445 TMEM72A0PK05 275 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 OR5H1A6NKK0 313 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 CLOCKO15516 846 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 HOXB4P17483 251 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 CCNA2P20248 432 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 CXCR1P25024 350 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 IRX1P78414 480 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 BSPH1Q075Z2 132 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 FADDQ13158 208 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 STK11Q15831 433 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF672Q499Z4 452 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 C6orf10Q5SRN2 563 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 WBP2NLQ6ICG8 309 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 OR7E24Q6IFN5 339 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 SEZ6L2Q6UXD5 910 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 LILRB1Q8NHL6 650 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 GTF2H4Q92759 462 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC35B4Q969S0 331 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 TAS2R16Q9NYV7 291 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 MALT1Q9UDY8 824 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 LAMP3Q9UQV4 416 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC9A8Q9Y2E8 581 aa16.84■□□□□ 0.29
CCDC28A-203ENST00000617445 A0A096LPI6 279 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 CIB4A0PJX0 185 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 DPRXA6NFQ7 191 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 POLR3GO15318 223 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 BCHEP06276 602 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 GPIP06744 558 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 IMPDH2P12268 514 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 EDNRAP25101 427 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 ACAA2P42765 397 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 ATP5J2P56134 94 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 LTBQ06643 244 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 ETFDHQ16134 617 aa16.83■□□□□ 0.28
CCDC28A-203ENST00000617445 VRK2Q86Y07 508 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms