RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SRRQ9GZT4 340 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 NKX1-2Q9UD57 310 aaPredicted RBP11.32□□□□□ -0.6
PCF11-201ENST00000298281 TXNDC12O95881 172 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 DRD5P21918 477 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 EDDM3AQ14507 147 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 YIF1BQ5BJH7 314 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 OR13C5Q8NGS8 318 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 OR13C2Q8NGS9 318 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 F2RL3Q96RI0 385 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 TPSD1Q9BZJ3 242 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 GTF3C1Q12789 2109 aa11.32□□□□□ -0.6
PCF11-201ENST00000298281 IGLON5A6NGN9 336 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZNF736B4DX44 427 aaPredicted RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 DPM1O60762 260 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ELK4P28324 431 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 EMP3P54852 163 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 UNC50Q53HI1 259 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 RTL6Q6ICC9 239 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 KRTCAP2Q8N6L1 136 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 APH1BQ8WW43 257 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 UCN3Q969E3 161 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ULBP3Q9BZM4 244 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 PITHD1Q9GZP4 211 aaPredicted RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 ARV1Q9H2C2 271 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 SLC6A5Q9Y345 797 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 NPTNQ9Y639 398 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 NAP1L6A6NFF2 107 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 MED6O75586 246 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 SMUG1Q53HV7 270 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 FIGLAQ6QHK4 219 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.31□□□□□ -0.6
PCF11-201ENST00000298281 SLC7A13Q8TCU3 470 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 MS4A4EQ96PG1 132 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 OR2M2Q96R28 347 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZDHHC7Q9NXF8 308 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 LTBP3Q9NS15 1303 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 TRBV11-1A0A0K0K1C0 115 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ANHXE9PGG2 379 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 NDUFB2O95178 105 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 TFP02787 698 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 TAS2R60P59551 318 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 RUNX3Q13761 415 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZNF648Q5T619 568 aaPredicted RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 KDM4DQ6B0I6 523 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 LARP4Q71RC2 724 aaKnown RBP eCLIP11.31□□□□□ -0.64e-17■□□□□ 10.5
PCF11-201ENST00000298281 PRSS48Q7RTY5 328 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 CD163Q86VB7 1156 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZFP41Q8N8Y5 198 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ITPKCQ96DU7 683 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 SLC17A9Q9BYT1 436 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 F3P13726 295 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ARSBP15848 533 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 S100A4P26447 101 aaKnown RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 UQCRFS1P47985 274 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 HOXA4Q00056 320 aaPredicted RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 CDRT4Q8N9R6 151 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 HSD17B11Q8NBQ5 300 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 MIB2Q96AX9 1013 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZNF587Q96SQ5 575 aaPredicted RBP11.31□□□□□ -0.6
PCF11-201ENST00000298281 STC2O76061 302 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 SCGB1A1P11684 91 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 HSD17B1P14061 328 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 BMI1P35226 326 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 AVPI1Q5T686 147 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 VASNQ6EMK4 673 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 OR5B3Q8NH48 314 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 TMPRSS5Q9H3S3 457 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ENPP4Q9Y6X5 453 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 PRSS3P35030 304 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 HBG1P69891 147 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 HBG2P69892 147 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 DEFA6Q01524 100 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 DSC1Q08554 894 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 IKZF1Q13422 519 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ARHGAP11BQ3KRB8 267 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 LCN8Q6JVE9 175 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 SLC35G3Q8N808 338 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 CNIH3Q8TBE1 160 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 BLNKQ8WV28 456 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 OLAHQ9NV23 265 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 EHFQ9NZC4 300 aa11.31□□□□□ -0.6
PCF11-201ENST00000298281 ZNF816-ZNF321PA0A0X1KG74 233 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 HSD17B6O14756 317 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 ONECUT2O95948 504 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 MRPS10P82664 201 aaKnown RBP11.3□□□□□ -0.6
PCF11-201ENST00000298281 PPP1R3AQ16821 1122 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 PAGE3Q5JUK9 113 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 ZNF321PQ8N8H1 164 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 SUMF1Q8NBK3 374 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 FIBINQ8TAL6 211 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 ARRDC3Q96B67 414 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 NOL4LQ96MY1 436 aaPredicted RBP11.3□□□□□ -0.6
PCF11-201ENST00000298281 METTL9Q9H1A3 318 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 IL23AQ9NPF7 189 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.3□□□□□ -0.6
PCF11-201ENST00000298281 SACM1LQ9NTJ5 587 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 SLC35D1Q9NTN3 355 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 NSG1A0A0A6YYJ2 146 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 NUDT19A8MXV4 375 aa11.3□□□□□ -0.6
PCF11-201ENST00000298281 SEMA4FO95754 770 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 144.4 ms