RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ERVPABLB-1P60509 514 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CD276Q5ZPR3 534 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 SLC16A9Q7RTY1 509 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF695Q8IW36 515 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CADM4Q8NFZ8 388 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 OR56B1Q8NGI3 324 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 SPOCK3Q9BQ16 436 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 OR51B5Q9H339 312 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 NRIP3Q9NQ35 241 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 RNF24Q9Y225 148 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 V9GY05 133 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 NPIPA5A0A0B4J1W7 369 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 TSPAN15O95858 294 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 MT-ATP6P00846 226 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 TBPP20226 339 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CD68P34810 354 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-211ENST00000543710 VEGFCP49767 419 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 AGTR2P50052 363 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 ATP1B3P54709 279 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 RPS23P62266 143 aaKnown RBP7.31□□□□□ -1.24
VPS13D-211ENST00000543710 TLE4Q04727 773 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 SLC10A2Q12908 348 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-211ENST00000543710 PET117Q6UWS5 81 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 ELMOD2Q8IZ81 293 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CNEP1R1Q8N9A8 125 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 SYNPRQ8TBG9 265 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF384Q8TF68 577 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CHAC2Q8WUX2 184 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 TSSK2Q96PF2 358 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 LYSMD1Q96S90 227 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 GABARAPL3Q9BY60 117 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 INIPQ9NRY2 104 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 SDHAF2Q9NX18 166 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 MYOTQ9UBF9 498 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 CLEC4EQ9ULY5 219 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 USP3Q9Y6I4 520 aa7.31□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF831Q5JPB2 1677 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PLSCR5A0PG75 271 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PSMD9O00233 223 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR2T7P0C7T2 308 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ARSAP15289 507 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 GALP22466 123 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 GLO1Q04760 184 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF267Q14586 743 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 POMZP3Q6PJE2 187 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PELI3Q8N2H9 469 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 IL17RCQ8NAC3 791 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR2T27Q8NH04 317 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TCTN2Q96GX1 697 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 THOC3Q96J01 351 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 NKX3-1Q99801 234 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ABCG5Q9H222 651 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PLCXD1Q9NUJ7 323 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 POT1Q9NUX5 634 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR6C2Q9NZP2 312 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 VAPAQ9P0L0 249 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 GMPR2Q9P2T1 348 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FBXO7Q9Y3I1 522 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF850A8MQ14 1090 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PMS2P2O95744 297 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLC16A8O95907 504 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 PRKCGP05129 697 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 HTR1FP30939 366 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CCR7P32248 378 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 HES3Q5TGS1 186 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM225Q6GV28 225 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TIPARPQ7Z3E1 657 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 IGFN1Q86VF2 1251 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 NDNFQ8TB73 568 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FNDC9Q8TBE3 224 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM40Q8WWA1 233 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 UBE2FQ969M7 185 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 DTD2Q96FN9 168 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 UHRF2Q96PU4 802 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 DPH2Q9BQC3 489 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 C1QTNF3Q9BXJ4 246 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 LYRM4Q9HD34 91 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 STRAPQ9Y3F4 350 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 TRDV1A0A1B0GX56 115 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ANKRD30BLA7E2S9 258 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SOX1O00570 391 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 GMDSO60547 372 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 BCAS1O75363 584 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 DIRAS1O95057 198 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FCGR2AP12318 317 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLC26A5P58743 744 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 KIAA1024LP59773 190 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 GRB2P62993 217 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SH3BP2P78314 561 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 ARF5P84085 180 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CLPPQ16740 277 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 SLC5A12Q1EHB4 618 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 KHDC1LQ5JSQ8 128 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 DPY19L2P2Q6ZN68 376 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 C2orf73Q8N5S3 287 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR51T1Q8NGJ9 327 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 OR11L1Q8NGX0 322 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 FAM46AQ96IP4 442 aaKnown RBP7.3□□□□□ -1.24
VPS13D-211ENST00000543710 CACNG6Q9BXT2 260 aa7.3□□□□□ -1.24
VPS13D-211ENST00000543710 MFRPQ9BY79 579 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms