RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 TNFSF15O95150 251 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ADCY5O95622 1261 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 RLN1P04808 185 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 GIMD1P0DJR0 217 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF18P17022 549 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ACKR3P25106 362 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 GDF1P27539 372 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 GTF2H1P32780 548 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 UQCRFS1P47985 274 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 NPBWR1P48145 328 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 SLC1A6P48664 564 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 STX17P56962 302 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 DAOAP59103 153 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ST8SIA6P61647 398 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 NME3Q13232 169 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PNOCQ13519 176 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 KIAA0040Q15053 153 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 C17orf58Q2M2W7 97 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 HNRNPA1L2Q32P51 320 aaKnown RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 LINC00303Q3SY05 128 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 MPPE1Q53F39 396 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 C9orf64Q5T6V5 341 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 SYPL2Q5VXT5 272 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PMF1Q6P1K2 205 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TMEM270Q6UE05 265 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 GCNT7Q6ZNI0 430 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TIFABQ6ZNK6 161 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 RABEPKQ7Z6M1 372 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 VPS36Q86VN1 386 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 NLRP14Q86W24 1093 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 CCDC71Q8IV32 467 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 SIX6OS1Q8N1H7 587 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF781Q8N8C0 355 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 NFAM1Q8NET5 270 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 OR2T34Q8NGX1 318 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 C8orf46Q8TAG6 207 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 RNF139Q8WU17 664 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 HTR3CQ8WXA8 447 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 FGF11Q92914 225 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 OTUB2Q96DC9 234 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PAGE5Q96GU1 130 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TSPAN18Q96SJ8 248 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 WRAP53Q9BUR4 548 aaKnown RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 HES7Q9BYE0 225 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TM6SF2Q9BZW4 377 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 RSPH9Q9H1X1 276 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TNMDQ9H2S6 317 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 FBXO44Q9H4M3 255 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF665Q9H7R5 613 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 CSNK1G1Q9HCP0 422 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ASCL3Q9NQ33 180 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 FAM212BQ9NTI7 297 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PISDQ9UG56 409 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 CYTH4Q9UIA0 394 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 VANGL2Q9ULK5 521 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 GPR132Q9UNW8 380 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PLA2G4CQ9UP65 541 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ETV7Q9Y603 341 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 POMT1Q9Y6A1 747 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 RELNP78509 3460 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ANAPC1Q9H1A4 1944 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 PLXNA2O75051 1894 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TMEM131Q92545 1883 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF462Q96JM2 2506 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF638Q14966 1978 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 A0A0D9SEW6 157 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 A0A0U1RQS6 177 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 GTPBP10A4D1E9 387 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 A8MX80 341 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 PANO1I0J062 215 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 K7EM74 188 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 XPO1O14980 1071 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 LATO43561 262 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 TIMM44O43615 452 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 STX6O43752 255 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 EIF5BO60841 1220 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 HSPA4LO95757 839 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 IGLV3-19P01714 112 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 PCCBP05166 539 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 SKILP12757 684 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 KRT13P13646 458 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 P4HA1P13674 534 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 MDKP21741 143 aaPredicted RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 ID1P41134 155 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 ARRB1P49407 418 aaPredicted RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 NDUFA8P51970 172 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 INCA1Q0VD86 236 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 BST2Q10589 180 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 CUL2Q13617 745 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 FZD2Q14332 565 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 RFTN2Q52LD8 501 aaPredicted RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 HSP90AA4PQ58FG1 418 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 MS4A13Q5J8X5 152 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 PIP5KL1Q5T9C9 394 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 NKAIN2Q5VXU1 208 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 LIPJQ5W064 366 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 RESP18Q5W5W9 173 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 SHQ1Q6PI26 577 aaKnown RBP2.27□□□□□ -2.05
SCFD1-219ENST00000556413 Q6ZSR6 202 aa2.27□□□□□ -2.05
SCFD1-219ENST00000556413 FAM183BPQ6ZVS7 135 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms