RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 LTBQ06643 244 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ST3GAL3Q11203 375 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 GANABQ14697 944 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 SLC10A1Q14973 349 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 QPRTQ15274 297 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 MICAQ29983 383 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ZNF766Q5HY98 468 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 COLEC12Q5KU26 742 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 C1QL3Q5VWW1 255 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 LPCAT4Q643R3 524 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 WBP2NLQ6ICG8 309 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 PPP4R4Q6NUP7 873 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 RPUSD3Q6P087 351 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 C19orf48Q6RUI8 117 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 PCSK4Q6UW60 755 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 DEF8Q6ZN54 512 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ZER1Q7Z7L7 766 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ATG4DQ86TL0 474 aaPredicted RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 CYP4Z1Q86W10 505 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 RNF113BQ8IZP6 322 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 HS3ST5Q8IZT8 346 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 OR52J3Q8NH60 311 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 OR5K1Q8NHB7 308 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 DNAJA4Q8WW22 397 aaPredicted RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 ZCCHC14Q8WYQ9 949 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 NR4A3Q92570 626 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 STMN2Q93045 179 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 C3orf49Q96BT1 292 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 C1GALT1C1Q96EU7 318 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 NRBF2Q96F24 287 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ALPK1Q96QP1 1244 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 UBL7Q96S82 380 aaPredicted RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 GPA33Q99795 319 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ARHGAP9Q9BRR9 750 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 BDH2Q9BUT1 245 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 FNDC11Q9BVV2 318 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 POLR2J2Q9GZM3 115 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP39-213ENST00000467885 POLR2J3Q9H1A7 115 aaKnown RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 ANKRD19PQ9H560 264 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 COQ10BQ9H8M1 238 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 HHATLQ9HCP6 504 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ACKR4Q9NPB9 350 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 MEPEQ9NQ76 525 aaPredicted RBP5.39□□□□□ -1.55
USP39-213ENST00000467885 CTPS2Q9NRF8 586 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 MED17Q9NVC6 651 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 KLRF1Q9NZS2 232 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 PPP4R1LQ9P1A2 415 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ABI3Q9P2A4 366 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 SLC13A4Q9UKG4 626 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 SLC7A7Q9UM01 511 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 ZNF337Q9Y3M9 751 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 TESMINQ9Y4I5 508 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 LYVE1Q9Y5Y7 322 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 U3KQV3 271 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 MGAQ8IWI9 3026 aa5.39□□□□□ -1.55
USP39-213ENST00000467885 LOC400499M0QZD8 3231 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 IGKV1D-42A0A075B6H8 117 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 A0A087WZY1 265 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 TMED7-TICAM2A0A0A6YYA0 188 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 TRAV17A0A0B4J275 112 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 C7orf72A4D263 438 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 SHISA8B8ZZ34 492 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 G3V2T6 193 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 PDLIM1O00151 329 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 GNGT2O14610 69 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 KLF4O43474 513 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 CDC40O60508 579 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP39-213ENST00000467885 NPIPB7O75200 414 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 HPNP05981 417 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 CELA3AP09093 270 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 FAM87AP0C7U9 286 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 FCGR1AP12314 374 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 GP1BBP13224 206 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 ELAVL4P26378 380 aaKnown RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 DPP4P27487 766 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 APOBEC1P41238 236 aaKnown RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 OMPP47874 163 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 DAPP51397 102 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 CLDN15P56746 228 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 TAS2R41P59536 307 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 PPIAP62937 165 aaKnown RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 PRKCDQ05655 676 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 FOXD4Q12950 439 aaPredicted RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 FHL1Q13642 323 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 CBFBQ13951 182 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 TRAM2Q15035 370 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 EXOC3L2Q2M3D2 409 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 PLPPR5Q32ZL2 321 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 DCST1Q5T197 706 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 OGFRL1Q5TC84 451 aaPredicted RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 C1orf94Q6P1W5 598 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 SHQ1Q6PI26 577 aaKnown RBP5.38□□□□□ -1.55
USP39-213ENST00000467885 NHLRC1Q6VVB1 395 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 ZBTB49Q6ZSB9 765 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 ASB18Q6ZVZ8 466 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 PLEKHM3Q6ZWE6 761 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 TMPRSS11FQ6ZWK6 438 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 MBOAT2Q6ZWT7 520 aa5.38□□□□□ -1.55
USP39-213ENST00000467885 YRDCQ86U90 279 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms