RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ALDH6A1Q02252 535 aaKnown RBP16.93■□□□□ 0.3
CLN3-206ENST00000360019 PTGES3Q15185 160 aaKnown RBP16.93■□□□□ 0.3
CLN3-206ENST00000360019 TTC33Q6PID6 262 aaPredicted RBP16.93■□□□□ 0.3
CLN3-206ENST00000360019 ZNF227Q86WZ6 799 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 KIF18BQ86Y91 864 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 C8orf59Q8N0T1 100 aaPredicted RBP16.93■□□□□ 0.3
CLN3-206ENST00000360019 CYP4Z2PQ8N1L4 340 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 THAP4Q8WY91 577 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 SGCZQ96LD1 299 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 SDHAF3Q9NRP4 125 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 STMN3Q9NZ72 180 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 EML6Q6ZMW3 1958 aa16.93■□□□□ 0.3
CLN3-206ENST00000360019 CDC40O60508 579 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLN3-206ENST00000360019 PNMTP11086 282 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 SUMO3P55854 103 aaPredicted RBP16.92■□□□□ 0.3
CLN3-206ENST00000360019 SLC30A6Q6NXT4 461 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 RTL4Q6ZR62 310 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 WDSUB1Q8N9V3 476 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 BPIFA2Q96DR5 249 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 CCNL2Q96S94 520 aaPredicted RBP16.92■□□□□ 0.3
CLN3-206ENST00000360019 ANGPTL4Q9BY76 406 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 DPH1Q9BZG8 443 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 KRCC1Q9NPI7 259 aaPredicted RBP16.92■□□□□ 0.3
CLN3-206ENST00000360019 TAS2R10Q9NYW0 307 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 OSGIN1Q9UJX0 560 aa16.92■□□□□ 0.3
CLN3-206ENST00000360019 ELOA3DA6NLF2 546 aaPredicted RBP16.91■□□□□ 0.3
CLN3-206ENST00000360019 GP1BBP13224 206 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 FUT1P19526 365 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 POU1F1P28069 291 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 HLCSP50747 726 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 CHN2P52757 468 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ISL1P61371 349 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 CRYZQ08257 329 aaKnown RBP16.91■□□□□ 0.3
CLN3-206ENST00000360019 IL18R1Q13478 541 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ELOA3BQ3SY89 546 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 TMEM236Q5W0B7 351 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 SLC22A10Q63ZE4 541 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 TMPRSS11FQ6ZWK6 438 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 GALNT16Q8N428 558 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ELOA3Q8NG57 546 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 PLA2G12AQ9BZM1 189 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 EGLN3Q9H6Z9 239 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 C12orf10Q9HB07 376 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 TEKT2Q9UIF3 430 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 DMXL2Q8TDJ6 3036 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ENO4A6NNW6 628 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ZAR1LA6NP61 321 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 H3BN98 237 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 MSX1P28360 303 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 GGT2P36268 569 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 CYB561P49447 251 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 TPD52P55327 224 aaPredicted RBP16.91■□□□□ 0.3
CLN3-206ENST00000360019 ABHD17BQ5VST6 288 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ARSKQ6UWY0 536 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 RASSF6Q6ZTQ3 369 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 THAP5Q7Z6K1 395 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 OR2M3Q8NG83 312 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 NPAS1Q99742 590 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 PNPLA3Q9NST1 481 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 FBXL2Q9UKC9 423 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 TMEM5Q9Y2B1 443 aa16.91■□□□□ 0.3
CLN3-206ENST00000360019 ANKRD33BA6NCL7 494 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 EIF4E1BA6NMX2 242 aaKnown RBP16.9■□□□□ 0.3
CLN3-206ENST00000360019 G3V3Y1 287 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 F10P00742 488 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 LYNP07948 512 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 PRKCAP17252 672 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 EGR4Q05215 589 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 CD47Q08722 323 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 CTU2Q2VPK5 515 aaKnown RBP16.9■□□□□ 0.3
CLN3-206ENST00000360019 GRINAQ7Z429 371 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 GPALPP1Q8IXQ4 340 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 FADS6Q8N9I5 356 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 OR8D4Q8NGM9 314 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 TMEM43Q9BTV4 400 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 SLC19A3Q9BZV2 496 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 MED17Q9NVC6 651 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 CPAMD8Q8IZJ3 1885 aa16.9■□□□□ 0.3
CLN3-206ENST00000360019 RPS6KA3P51812 740 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 RRADP55042 308 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 DLX5P56178 289 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 OC90Q02509 493 aaPredicted RBP16.89■□□□□ 0.29
CLN3-206ENST00000360019 POMZP3Q6PJE2 187 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 ZNF620Q6ZNG0 422 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 ST8SIA1Q92185 356 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 FGF11Q92914 225 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 UBE2FQ969M7 185 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 APOL4Q9BPW4 351 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 VDAC3Q9Y277 283 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 MPDZO75970 2070 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 ETV2O00321 342 aaPredicted RBP16.89■□□□□ 0.29
CLN3-206ENST00000360019 TLX3O43711 291 aaPredicted RBP16.89■□□□□ 0.29
CLN3-206ENST00000360019 CD96P40200 585 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 POLR2HP52434 150 aaKnown RBP16.89■□□□□ 0.29
CLN3-206ENST00000360019 SOX8P57073 446 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 IL5RAQ01344 420 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 TUBA3CQ13748 450 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 TUBA3EQ6PEY2 450 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 LINC00696Q6ZRV3 163 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 ADGRG3Q86Y34 549 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms