RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SYAP1Q96A49 352 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 RAB3IPQ96QF0 476 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 AP1M1Q9BXS5 423 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CALN1Q9BXU9 219 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 FAM124BQ9H5Z6 455 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ACP6Q9NPH0 428 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 PFDN4Q9NQP4 134 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 FBXL12Q9NXK8 326 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 ITM2BQ9Y287 266 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 PTPRDP23468 1912 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 PLXNB3Q9ULL4 1909 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 CITO14578 2027 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 GCN1Q92616 2671 aaKnown RBP2.3□□□□□ -2.04
SCFD1-219ENST00000556413 COL12A1Q99715 3063 aa2.3□□□□□ -2.04
SCFD1-219ENST00000556413 SETXQ7Z333 2677 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 NUMA1Q14980 2115 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 MYOFQ9NZM1 2061 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 NUP205Q92621 2012 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 TCHHQ07283 1943 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 A0A1B0GVL5 298 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF724A8MTY0 619 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF487B1APH4 448 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 H0YIG0 161 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 M0QYV0 167 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CTDSPLO15194 276 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 RRP8O43159 456 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 LRRTM2O43300 516 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 KLRC4O43908 158 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 NME6O75414 186 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ASS1P00966 412 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CTSLP07711 333 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 PNMA6AP0CW24 399 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 RALAP11233 206 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 POLR2EP19388 210 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SYT1P21579 422 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CETN1Q12798 172 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CEACAM7Q14002 265 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ABRAXAS2Q15018 415 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CST6Q15828 149 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 FAM133BQ5BKY9 247 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF544Q6NX49 715 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 PODNL1Q6PEZ8 512 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SIGLEC15Q6ZMC9 328 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CCDC73Q6ZRK6 1079 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 FAM47EQ6ZV65 393 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 RFPL4BQ6ZWI9 263 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 EFL1Q7Z2Z2 1120 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 PHLDB2Q86SQ0 1253 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SLC22A18ASQ8N1D0 253 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SLC25A45Q8N413 288 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 TMEM99Q8N816 258 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 Q8N9G6 341 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 LINC00301Q8NCQ3 95 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CCDC26Q8TAB7 109 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SETD6Q8TBK2 473 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF564Q8TBZ8 553 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 LMX1AQ8TE12 382 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 DQX1Q8TE96 717 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CORO2AQ92828 525 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 FAM104AQ969W3 186 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 TMA16Q96EY4 203 aaKnown RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZBED6CLQ96FA7 236 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 OMDQ99983 421 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ATG101Q9BSB4 218 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CCM2Q9BSQ5 444 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 NUP58Q9BVL2 599 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 DUSP16Q9BY84 665 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 TMEM245Q9H330 911 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZSCAN16Q9H4T2 348 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CLMPQ9H6B4 373 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 GDF3Q9NR23 364 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 CISHQ9NSE2 258 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF446Q9NWS9 450 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 IL37Q9NZH6 218 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ABCG2Q9UNQ0 655 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 MOKQ9UQ07 419 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ERVW-1Q9UQF0 538 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SCML2Q9UQR0 700 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 FBXO7Q9Y3I1 522 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 U3KQA8 63 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 ATMQ13315 3056 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 KALRNO60229 2985 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 IGSF10Q6WRI0 2623 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 SPAG17Q6Q759 2223 aa2.29□□□□□ -2.04
SCFD1-219ENST00000556413 MGAQ8IWI9 3026 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ASH1LQ9NR48 2969 aaKnown RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 AKAP9Q99996 3911 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TENM4Q6N022 2769 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ANKRD11Q6UB99 2663 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ASXL3Q9C0F0 2248 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 CABIN1Q9Y6J0 2220 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 UBE4BO95155 1302 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 ILVBLA1L0T0 632 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 FAM92AA1XBS5 289 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 CCDC162PA2VCL2 907 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 OR5H15A6NDH6 313 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TCP11X1B4DZS4 312 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 TLR4O00206 839 aa2.28□□□□□ -2.04
SCFD1-219ENST00000556413 KPNA3O00505 521 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-219ENST00000556413 DUX1O43812 170 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms