RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TRABD2BA6NFA1 517 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 PTNP21246 168 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 DPP4P27487 766 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MC1RQ01726 317 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MXD1Q05195 221 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GANABQ14697 944 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ANKRD54Q6NXT1 300 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF613Q6PF04 617 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MAMSTRQ6ZN01 415 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TAF8Q7Z7C8 310 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TTLQ8NG68 377 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR2L5Q8NG80 312 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR2AP1Q8NGE2 309 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR1S1Q8NH92 325 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 NEK7Q8TDX7 302 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CACNG6Q9BXT2 260 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF436Q9C0F3 470 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 WDR13Q9H1Z4 485 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 COMMD9Q9P000 198 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CFAP97Q9P2B7 532 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 KLHL9Q9P2J3 617 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CA14Q9ULX7 337 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MAGEB4O15481 346 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 THBS1P07996 1170 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CALCBP10092 127 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ATP5A1P25705 553 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MAOBP27338 520 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 RPA4Q13156 261 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 PXDC1Q5TGL8 231 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 UBE3DQ7Z6J8 389 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 KCNRGQ8N5I3 272 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZCCHC10Q8TBK6 192 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 RHBDD1Q8TEB9 315 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZC3H10Q96K80 434 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM14Q96QK8 99 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ACSL6Q9UKU0 697 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR6C70A6NIJ9 312 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GABARAPH6UMI1 98 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TLX1P31314 330 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 RORAP35398 523 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 BLKP51451 505 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SCARB2Q14108 478 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 LAPTM4AQ15012 233 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 PGGHGQ32M88 737 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR2L13Q8N349 312 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF480Q8WV37 535 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 BRI3BPQ8WY22 251 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 MRPS24Q96EL2 167 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 IL4I1Q96RQ9 567 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ESRP2Q9H6T0 727 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF304Q9HCX3 659 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 IFT46Q9NQC8 304 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ING4Q9UNL4 249 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GBF1Q92538 1859 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 A0A0D9SEW6 157 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 A0A0G2JPF8 293 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1W2PQ72 361 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 HNRNPCL3B7ZW38 293 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GABRPO00591 440 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CHST10O43529 356 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ERAL1O75616 437 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CDRT1O95170 752 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 HNRNPCL4P0DMR1 293 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SLC2A1P11166 492 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 EPXP11678 715 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CD79AP11912 226 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 IL9P15248 144 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SEC61A1P61619 476 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ILF3Q12906 894 aaKnown RBP eCLIP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GFOD2Q3B7J2 385 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 COX20Q5RI15 118 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TPGS2Q68CL5 300 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 PTCRAQ6ISU1 281 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SFXN4Q6P4A7 337 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SLC36A4Q6YBV0 504 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CLDN19Q8N6F1 224 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 EXOSC8Q96B26 276 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 THAP7Q9BT49 309 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TRMT61BQ9BVS5 477 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 DMRT3Q9NQL9 472 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM218A2RU14 115 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TRAPPC13A5PLN9 417 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 LRIT2A6NDA9 550 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ACOD1A6NK06 481 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM6P0DI80 62 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 C1GALT1C1LP0DN25 315 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GABRR2P28476 465 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 CD79BP40259 229 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 ACLYP53396 1101 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 HNRNPA0Q13151 305 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 RSPO2Q6UXX9 243 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 IRF7Q92985 503 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 UBE2E3Q969T4 207 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 FBXW5Q969U6 566 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM19Q96HH6 336 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 SFXN2Q96NB2 322 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 DPH7Q9BTV6 452 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 HINT3Q9NQE9 182 aaKnown RBP4.96□□□□□ -1.62
SYNE1-220ENST00000471834 GPR34Q9UPC5 381 aa4.96□□□□□ -1.62
SYNE1-220ENST00000471834 OR14I1A6ND48 311 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms