RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GOLGA8NF8WBI6 632 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 KIAA0513O60268 411 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 PRKD3O94806 890 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 PABPC4LP0CB38 370 aaKnown RBP18.47■□□□□ 0.55
SDC1-205ENST00000447124 UBTFL6P0CB48 400 aaPredicted RBP18.47■□□□□ 0.55
SDC1-205ENST00000447124 EPHA3P29320 983 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 CDKN2CP42773 168 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 RAC3P60763 192 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 PLAURQ03405 335 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 CHRNEQ04844 493 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 SELENBP1Q13228 472 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 ACKR1Q16570 336 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 REXO5Q96IC2 774 aaKnown RBP18.47■□□□□ 0.55
SDC1-205ENST00000447124 SLC35A5Q9BS91 424 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 ACER3Q9NUN7 267 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 MARCOQ9UEW3 520 aaPredicted RBP18.47■□□□□ 0.55
SDC1-205ENST00000447124 GPR52Q9Y2T5 361 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 WDR45Q9Y484 360 aa18.47■□□□□ 0.55
SDC1-205ENST00000447124 UQCRHLA0A096LP55 91 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 HDAC3O15379 428 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 GCM2O75603 506 aaPredicted RBP18.46■□□□□ 0.55
SDC1-205ENST00000447124 AGR2O95994 175 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 KITP10721 976 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 PPP3CBP16298 524 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 NKX6-1P78426 367 aaPredicted RBP18.46■□□□□ 0.55
SDC1-205ENST00000447124 RNPS1Q15287 305 aaKnown RBP18.46■□□□□ 0.55
SDC1-205ENST00000447124 TSC22D1Q15714 1073 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 DPY19L1Q2PZI1 675 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 TMEM201Q5SNT2 666 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 TFAP2EQ6VUC0 442 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 EIF3MQ7L2H7 374 aaKnown RBP18.46■□□□□ 0.55
SDC1-205ENST00000447124 SPATA19Q7Z5L4 167 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 LSRQ86X29 649 aaPredicted RBP18.46■□□□□ 0.55
SDC1-205ENST00000447124 GABRG1Q8N1C3 465 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 FAM71CQ8NEG0 241 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 ACTR6Q9GZN1 396 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 UBTD1Q9HAC8 227 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 POLE3Q9NRF9 147 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 KLHL13Q9P2N7 655 aa18.46■□□□□ 0.55
SDC1-205ENST00000447124 NIPBLQ6KC79 2804 aaeCLIP18.45■□□□□ 0.54
SDC1-205ENST00000447124 DSCAMO60469 2012 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.45■□□□□ 0.54
SDC1-205ENST00000447124 CCDC154A6NI56 674 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 CLDN24A6NM45 220 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ZNF814B7Z6K7 855 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 HMGN4O00479 90 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ADAM11O75078 769 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 PLAUP00749 431 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 YES1P07947 543 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 PSMB1P20618 241 aaKnown RBP18.45■□□□□ 0.54
SDC1-205ENST00000447124 CHI3L1P36222 383 aaPredicted RBP18.45■□□□□ 0.54
SDC1-205ENST00000447124 MAGOHP61326 146 aaKnown RBP18.45■□□□□ 0.54
SDC1-205ENST00000447124 ATAD3BQ5T9A4 648 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 PLEKHM3Q6ZWE6 761 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 STK32CQ86UX6 486 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 RNF130Q86XS8 419 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ZNF619Q8N2I2 560 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ANKFN1Q8N957 763 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ST8SIA1Q92185 356 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 ZNF775Q96BV0 537 aaPredicted RBP18.45■□□□□ 0.54
SDC1-205ENST00000447124 TLCD1Q96CP7 247 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 PIP5K1AQ99755 562 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 PSD2Q9BQI7 771 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 TMBIM4Q9HC24 238 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 GP6Q9HCN6 339 aa18.45■□□□□ 0.54
SDC1-205ENST00000447124 NAV3Q8IVL0 2385 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 USF3Q68DE3 2245 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 GSNP06396 782 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 PGRP06401 933 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 FOSL1P15407 271 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 EDNRAP25101 427 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 SLC7A1P30825 629 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 SLC18A1P54219 525 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 KCNJ10P78508 379 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 MERTKQ12866 999 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 SYPL1Q16563 259 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 BEX5Q5H9J7 111 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 BEND6Q5SZJ8 279 aaPredicted RBP18.44■□□□□ 0.54
SDC1-205ENST00000447124 ZNF621Q6ZSS3 439 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 MAVSQ7Z434 540 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 WFDC8Q8IUA0 241 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 SLC43A2Q8N370 569 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 ZNF75CPQ92670 426 aaPredicted RBP18.44■□□□□ 0.54
SDC1-205ENST00000447124 OR5B2Q96R09 309 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 OR52E6Q96RD3 313 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 OR10A4Q9H209 315 aa18.44■□□□□ 0.54
SDC1-205ENST00000447124 SMAD9O15198 467 aaKnown RBP18.43■□□□□ 0.54
SDC1-205ENST00000447124 PGCP20142 388 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 RYKP34925 604 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 KHKP50053 298 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 SLC9B1Q4ZJI4 515 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 GPAT3Q53EU6 434 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 COX20Q5RI15 118 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 TMPPEQ6ZT21 453 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 CNOT9Q92600 299 aaKnown RBP18.43■□□□□ 0.54
SDC1-205ENST00000447124 PIGTQ969N2 578 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 S100PBPQ96BU1 408 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 MAELQ96JY0 434 aaKnown RBP18.43■□□□□ 0.54
SDC1-205ENST00000447124 PANX1Q96RD7 426 aa18.43■□□□□ 0.54
SDC1-205ENST00000447124 CCDC106Q9BWC9 280 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms