RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 JUNBP17275 347 aaPredicted RBP16.61■□□□□ 0.25
VIM-201ENST00000224237 TTKP33981 857 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 ROR2Q01974 943 aaKnown RBP16.61■□□□□ 0.25
VIM-201ENST00000224237 ZNF117Q03924 483 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 PIGFQ07326 219 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 EXT1Q16394 746 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 BTBD16Q32M84 506 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 TMEM164Q5U3C3 297 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 RPL13AP3Q6NVV1 102 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 OR8D4Q8NGM9 314 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 ELP5Q8TE02 316 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 C3orf49Q96BT1 292 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 TUBA1CQ9BQE3 449 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 TEX12Q9BXU0 123 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 ATP13A2Q9NQ11 1180 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 TVP23BQ9NYZ1 205 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 MYOTQ9UBF9 498 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 PCDHGB1Q9Y5G3 927 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 HS3ST3B1Q9Y662 390 aa16.61■□□□□ 0.25
VIM-201ENST00000224237 CLCA1A8K7I4 914 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 OIP5O43482 229 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 HCRTR2O43614 444 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 FADS1O60427 444 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 FOXD2O60548 495 aaPredicted RBP16.6■□□□□ 0.25
VIM-201ENST00000224237 COX6A1P12074 109 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 MAKP20794 623 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 NBL1P41271 181 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 PCYT1AP49585 367 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 TMED10P49755 219 aaKnown RBP16.6■□□□□ 0.25
VIM-201ENST00000224237 TMEM201Q5SNT2 666 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 XAF1Q6GPH4 301 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 ACSM5Q6NUN0 579 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 B3GNT6Q6ZMB0 384 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 C16orf47Q6ZP98 133 aaPredicted RBP16.6■□□□□ 0.25
VIM-201ENST00000224237 AHSA2Q719I0 299 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 PRSS48Q7RTY5 328 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 MRGPREQ86SM8 312 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 MARCH3Q86UD3 253 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 TMIGD2Q96BF3 282 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 TMCO6Q96DC7 493 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 SLC38A2Q96QD8 506 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 IL4I1Q96RQ9 567 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 RHNO1Q9BSD3 238 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 DEFB126Q9BYW3 111 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 RTN4RQ9BZR6 473 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 PTTG2Q9NZH5 202 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 PSORS1C1Q9UIG5 152 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 CEPT1Q9Y6K0 416 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 RIF1Q5UIP0 2472 aaKnown RBP16.6■□□□□ 0.25
VIM-201ENST00000224237 KNTC1P50748 2209 aa16.6■□□□□ 0.25
VIM-201ENST00000224237 EXPH5Q8NEV8 1989 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 CCDC160A6NGH7 325 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 C9orf172C9J069 976 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 NADKO95544 446 aaPredicted RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 RAB40ALP0C0E4 278 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SAGP10523 405 aaPredicted RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 PNMTP11086 282 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 PMS2P3Q13401 168 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 LSAMPQ13449 338 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 ZBED5Q49AG3 693 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 MISPQ8IVT2 679 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 TCEANCQ8N8B7 351 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 FANK1Q8TC84 345 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SLC22A8Q8TCC7 542 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 BRIX1Q8TDN6 353 aaKnown RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 SH3YL1Q96HL8 342 aaPredicted RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 PHOX2BQ99453 314 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 COPS4Q9BT78 406 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 TSSK6Q9BXA6 273 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 FKBP14Q9NWM8 211 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 ERVK-18Q9QC07 812 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 H3BSA7 217 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 ZNF354AO60765 605 aaPredicted RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 NUDT6P53370 316 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 CRYZQ08257 329 aaKnown RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 RAB39AQ14964 217 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SNAPC1Q16533 368 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 CLEC12AQ5QGZ9 265 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 TIPARPQ7Z3E1 657 aaKnown RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 SVOPQ8N4V2 548 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 OR2T33Q8NG76 320 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 OR52L1Q8NGH7 329 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 ZNF563Q8TA94 476 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 MYDGFQ969H8 173 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 NMD3Q96D46 503 aaKnown RBP16.59■□□□□ 0.25
VIM-201ENST00000224237 IMMP1LQ96LU5 166 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SIGLEC11Q96RL6 698 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SLC19A3Q9BZV2 496 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 SPRY4Q9C004 299 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 OR52D1Q9H346 318 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 AMBNQ9NP70 447 aa16.59■□□□□ 0.25
VIM-201ENST00000224237 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.58■□□□□ 0.24
VIM-201ENST00000224237 A0A1W2PQ72 361 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 EFCAB9A8MZ26 197 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 SCO2O43819 266 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 PRKYO43930 277 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 RCBTB2O95199 551 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 BMP7P18075 431 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 TCN2P20062 427 aa16.58■□□□□ 0.24
VIM-201ENST00000224237 PCMT1P22061 227 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms