RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 SMPDL3BQ92485 455 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 UCN2Q96RP3 112 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 CCDC106Q9BWC9 280 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 TMEM38AQ9H6F2 299 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 DNAJB12Q9NXW2 375 aaKnown RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 COQ3Q9NZJ6 369 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 PLEKHB1Q9UF11 243 aaPredicted RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 Q9UFV3 132 aa20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 GPC6Q9Y625 555 aaPredicted RBP20.49■□□□□ 0.87
SFSWAP-204ENST00000535399 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 CLCA1A8K7I4 914 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 MRASO14807 208 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 EFNA2O43921 213 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 ADAM11O75078 769 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 PGM3O95394 542 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 IL7RP16871 459 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 IL11P20809 199 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 ADH6P28332 368 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 TIMP3P35625 211 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 CDK6Q00534 326 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 CYLC2Q14093 348 aaPredicted RBP20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 MMEL1Q495T6 779 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 LIN52Q52LA3 116 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 MRPL2Q5T653 305 aaKnown RBP20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 GGNQ86UU5 652 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 MEIOBQ8N635 442 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 OR10Q1Q8NGQ4 319 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 FBXO27Q8NI29 283 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 BBS10Q8TAM1 723 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 ASB5Q8WWX0 329 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 CLCF1Q9UBD9 225 aa20.48■□□□□ 0.87
SFSWAP-204ENST00000535399 MBD3L4A6NDZ8 208 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 MBD3L3A6NE82 208 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 MBD3L5A6NJ08 208 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 SEC14L5O43304 696 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 THBS1P07996 1170 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 PGCP20142 388 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 CHRNB4P30926 498 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 CEACAM8P31997 349 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 RAC1P63000 192 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 EEF1A1P68104 462 aaKnown RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 PLXDC2Q6UX71 529 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 ZNF836Q6ZNA1 936 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 PTOV1Q86YD1 416 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 TREML1Q86YW5 311 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 POU5F2Q8N7G0 328 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 C9orf106Q8NAJ2 232 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 TNIP2Q8NFZ5 429 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 MBD3L2Q8NHZ7 208 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 LRRC58Q96CX6 371 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 MRGPRX4Q96LA9 322 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 SLC39A3Q9BRY0 314 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 MYLK2Q9H1R3 596 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 KAT8Q9H7Z6 458 aaKnown RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 ACER3Q9NUN7 267 aa20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 ZNF443Q9Y2A4 671 aaPredicted RBP20.47■□□□□ 0.87
SFSWAP-204ENST00000535399 UTP20O75691 2785 aaKnown RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 CDHR4A6H8M9 788 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 C5orf58C9J3I9 102 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 CLDN14O95500 239 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 ELK4P28324 431 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 DLX5P56178 289 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 EEFSECP57772 596 aaKnown RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 SESN3P58005 492 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 NANOGP8Q6NSW7 305 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 REEP3Q6NUK4 255 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 NET1Q7Z628 596 aaPredicted RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 NAXEQ8NCW5 288 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 LILRB4Q8NHJ6 448 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 RP9Q8TA86 221 aaKnown RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 ST8SIA1Q92185 356 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 ADGRG7Q96K78 797 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 TMEM185BQ9H7F4 350 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 NANOGQ9H9S0 305 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 RLIMQ9NVW2 624 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 STOML1Q9UBI4 398 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 CHST2Q9Y4C5 530 aa20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 KLF2Q9Y5W3 355 aaPredicted RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 PHF3Q92576 2039 aaKnown RBP20.46■□□□□ 0.87
SFSWAP-204ENST00000535399 NPPAP01160 153 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 OPN1LWP04000 364 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 ETS2P15036 469 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 SHC1P29353 583 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 RYKP34925 604 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 SLC6A8P48029 635 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 GZMMP51124 257 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 SCARB2Q14108 478 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 LARS2Q15031 903 aaKnown RBP20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 CTU2Q2VPK5 515 aaKnown RBP20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 RNF220Q5VTB9 566 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 PIGWQ7Z7B1 504 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 LIX1LQ8IVB5 337 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 CLIP4Q8N3C7 705 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 PCYOX1LQ8NBM8 494 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 CA5BP1Q8WTZ4 195 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 WNT2BQ93097 391 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 RCN3Q96D15 328 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 RSPO3Q9BXY4 272 aaPredicted RBP20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 ZNF232Q9UNY5 417 aa20.45■□□□□ 0.86
SFSWAP-204ENST00000535399 IFT52Q9Y366 437 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms