RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ASB7Q9H672 318 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 PLEKHA3Q9HB20 300 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 TM9SF3Q9HD45 589 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 AGPAT3Q9NRZ7 376 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 UXTQ9UBK9 157 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-219ENST00000556413 XPO7Q9UIA9 1087 aaKnown RBP2.33□□□□□ -2.04
SCFD1-219ENST00000556413 ANAPC5Q9UJX4 755 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 CDH9Q9ULB4 789 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 ODF2LQ9ULJ1 636 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 SMC3Q9UQE7 1217 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 CNOT1A5YKK6 2376 aaKnown RBP2.33□□□□□ -2.04
SCFD1-219ENST00000556413 SCN1AP35498 2009 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 ITPR1Q14643 2758 aa2.33□□□□□ -2.04
SCFD1-219ENST00000556413 NUP210Q8TEM1 1887 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-219ENST00000556413 TRIP11Q15643 1979 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SYNJ2BP-COX16A0A087WUM0 186 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 HTR3EA5X5Y0 456 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ANKDD1BA6NHY2 528 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 FOXI3A8MTJ6 420 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 P2RX6O15547 441 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CACNG3O60359 315 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 RTN2O75298 545 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 NEBLO76041 1014 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LYPD3O95274 346 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 IGHV4-34P06331 123 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 APOA4P06727 396 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 MDH2P40926 338 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PRPHP41219 470 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 TNFRSF4P43489 277 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 GCLMP48507 274 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ACADVLP49748 655 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 STK19P49842 368 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF133P52736 654 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 C21orf59P57076 290 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ERVPABLB-1P60509 514 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 RPS14P62263 151 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 RPS27AP62979 156 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 HMGN5P82970 282 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 FOLH1Q04609 750 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PPA1Q15181 289 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SNRNP35Q16560 246 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CFAP221Q4G0U5 840 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 OR6B2Q6IFH4 312 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CAVIN1Q6NZI2 390 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CLEC20AQ6ZU45 233 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 NUFIP2Q7Z417 695 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 MMAAQ8IVH4 418 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CD302Q8IX05 232 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 TIGD4Q8IY51 512 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 UBQLNLQ8IYU4 475 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 NUP93Q8N1F7 819 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 STK40Q8N2I9 435 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 TMEM86AQ8N2M4 240 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SLC43A2Q8N370 569 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LRRC52Q8N7C0 313 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SMYD1Q8NB12 490 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LINC01006Q8NI28 216 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 UBA3Q8TBC4 463 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 DDI1Q8WTU0 396 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 C2orf15Q8WU43 125 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LIPHQ8WWY8 451 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PRCCQ92733 491 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 BIRC7Q96CA5 298 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 BPIFA2Q96DR5 249 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SPATA17Q96L03 361 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ANKRD27Q96NW4 1050 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 GABRG3Q99928 467 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LLPHQ9BRT6 129 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PAXXQ9BUH6 204 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 TIPINQ9BVW5 301 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PINK1Q9BXM7 581 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 CCSER1Q9C0I3 900 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 PRORYQ9H606 182 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 DMAP1Q9NPF5 467 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ABCB8Q9NUT2 735 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 GDAP2Q9NXN4 497 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 COX16Q9P0S2 106 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 UBQLN2Q9UHD9 624 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 LSM7Q9UK45 103 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 EXOC7Q9UPT5 735 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 SNX10Q9Y5X0 201 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 COL5A1P20908 1838 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 KIAA1549LQ6ZVL6 1849 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ANK1P16157 1881 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 MYO16Q9Y6X6 1858 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 FAM208BQ5VWN6 2430 aa2.32□□□□□ -2.04
SCFD1-219ENST00000556413 HELZP42694 1942 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 ASCC3Q8N3C0 2202 aaKnown RBP2.32□□□□□ -2.04
SCFD1-219ENST00000556413 MUC22E2RYF6 1773 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 FASNP49327 2511 aaKnown RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 OBSL1O75147 1896 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 THADAQ6YHU6 1953 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ZNF233A6NK53 670 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 H0Y626 953 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 H0YCG3 227 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 SLC9A3R1O14745 358 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-219ENST00000556413 ST8SIA3O43173 380 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TBL1XO60907 577 aa2.31□□□□□ -2.04
SCFD1-219ENST00000556413 TRIM16O95361 564 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms