RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TNFAIP8L1Q8WVP5 186 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 C12orf57Q99622 126 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC6A17Q9H1V8 727 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 HRASLSQ9HDD0 168 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 POLMQ9NP87 494 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 TAC3Q9UHF0 121 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 OR6C74A6NCV1 312 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 NFATC1O95644 943 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 HMGN2P05204 90 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 GIPP09681 153 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 C8orf89P0DMQ9 161 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 HMGA1P17096 107 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 OR12D2P58182 307 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SEC61A1P61619 476 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 FLI1Q01543 452 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SCRN3Q0VDG4 424 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 DYRK1AQ13627 763 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 C9orf64Q5T6V5 341 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 GDPD4Q6W3E5 623 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 NUDT13Q86X67 352 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 HDDC3Q8N4P3 179 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 ZDHHC1Q8WTX9 485 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC38A3Q99624 504 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 IFT22Q9H7X7 185 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 KRCC1Q9NPI7 259 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SIRT3Q9NTG7 399 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 EXOGQ9Y2C4 368 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 FAM86C2PA6NEL3 165 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 D6RAR5 112 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 PPP3CBP16298 524 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 GALP22466 123 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 MC2RQ01718 297 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 TGM3Q08188 693 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 CPXM2Q8N436 756 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 OR11G2Q8NGC1 345 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 OR52I2Q8NH67 350 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 TMEM255BQ8WV15 326 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SMIM4Q8WVI0 70 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 MYLIPQ8WY64 445 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 OVCA2Q8WZ82 227 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 FGF11Q92914 225 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 GLYATL1Q969I3 302 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 ELP4Q96EB1 424 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 EMC3Q9P0I2 261 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC45A1Q9Y2W3 748 aa11.97□□□□□ -0.49
SFSWAP-209ENST00000540469 SCN8AQ9UQD0 1980 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 CACNB4O00305 520 aaPredicted RBP11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 SUSD5O60279 629 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 KRT33AO76009 404 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 KLHL18O94889 574 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 TGM6O95932 706 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 ADRB1P08588 477 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 KLF9Q13886 244 aaPredicted RBP11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 TRAM1Q15629 374 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 MEPCEQ7L2J0 689 aaKnown RBP11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 DGLUCYQ7Z3D6 616 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 CYB561A3Q8NBI2 242 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 ACOT11Q8WXI4 607 aaPredicted RBP11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 DPH7Q9BTV6 452 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 MARCH5Q9NX47 278 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 ACTR10Q9NZ32 417 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 ABRACLQ9P1F3 81 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 MRTO4Q9UKD2 239 aaKnown RBP11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 PLCL2Q9UPR0 1127 aa11.96□□□□□ -0.49
SFSWAP-209ENST00000540469 A0A1B0GUH1 482 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 PLSCR5A0PG75 271 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 NDUFA2O43678 99 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 PRKRAO75569 313 aaKnown RBP11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 ARL6IP5O75915 188 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 GAAP10253 952 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 UBE2MP61081 183 aaKnown RBP11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 SHC2P98077 582 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 BDH1Q02338 343 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 NDUFAF6Q330K2 333 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 ZNF620Q6ZNG0 422 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 CCDC116Q8IYX3 515 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 OR6V1Q8N148 313 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 OR52B4Q8NGK2 314 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 FANK1Q8TC84 345 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 FCAMRQ8WWV6 532 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 WDR89Q96FK6 387 aaPredicted RBP11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 C16orf58Q96GQ5 468 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 PPP1R16AQ96I34 528 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 AIF1LQ9BQI0 150 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 PINK1Q9BXM7 581 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 DPH1Q9BZG8 443 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 OR2AG1Q9H205 316 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 UBQLN3Q9H347 655 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 NTMQ9P121 344 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 KLHL9Q9P2J3 617 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 KLK11Q9UBX7 282 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 NPFFR2Q9Y5X5 522 aa11.96□□□□□ -0.5
SFSWAP-209ENST00000540469 SLC5A10A0PJK1 596 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 FAM74A7A6NL05 159 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 A8MXK9 166 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 G3V3Q6 166 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 NPC1O15118 1278 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 ECDO95905 644 aaPredicted RBP11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 GYPBP06028 91 aa11.95□□□□□ -0.5
SFSWAP-209ENST00000540469 UCHL1P09936 223 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms