RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 UBBP0CG47 229 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 UBCP0CG48 685 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 REEP5Q00765 189 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 IER5LQ5T953 404 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ZBTB44Q8NCP5 570 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TIMM29Q9BSF4 260 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 RBM24Q9BX46 236 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 IGSF5Q9NSI5 407 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 NCDNQ9UBB6 729 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 RIMS3Q9UJD0 308 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HEMK1Q9Y5R4 338 aaPredicted RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 A0A087WZY1 265 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 NFKBIEO00221 500 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 RPS27AP62979 156 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 UBA52P62987 128 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TATDN3Q17R31 274 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 AAK1Q2M2I8 961 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PLAG1Q6DJT9 500 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 MRPL21Q7Z2W9 205 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ZNF679Q8IYX0 411 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 OR52H1Q8NGJ2 320 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 OR51Q1Q8NH59 317 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TBC1D20Q96BZ9 403 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ZMYND19Q96E35 227 aaPredicted RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PRRT1Q99946 306 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 XYLT2Q9H1B5 865 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SFXN1Q9H9B4 322 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ZDHHC7Q9NXF8 308 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 C2orf72A6NCS6 295 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 FAM171A2A8MVW0 826 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TNFSF12O43508 249 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 STC2O76061 302 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 APLNRP35414 380 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 NUDT1P36639 197 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ARSDP51689 593 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SCAPQ12770 1279 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 OR51L1Q8NGJ5 315 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 OR10R2Q8NGX6 335 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 NPRL2Q8WTW4 380 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PCNPQ8WW12 178 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SLC12A9Q9BXP2 914 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 CNIH4Q9P003 139 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 BTNL2Q9UIR0 455 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 INTS6Q9UL03 887 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 RHBDD3Q9Y3P4 386 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SIGLEC1Q9BZZ2 1709 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SRPX2O60687 465 aaPredicted RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HBQ1P09105 142 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HNRNPA1P09651 372 aaKnown RBP eCLIP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 CPN1P15169 458 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 GNB3P16520 340 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 IL1RNP18510 177 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SLC5A2P31639 672 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HMGCLP35914 325 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PRAMEF8Q5VWM4 474 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PRAMEF7Q5VXH5 474 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 MEX3BQ6ZN04 569 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 GPRIN1Q7Z2K8 1008 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ISCA2Q86U28 154 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PPP1R35Q8TAP8 253 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ST8SIA4Q92187 359 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 DUOX1Q9NRD9 1551 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 LOC102723532A0A0G2JNH3 316 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 M0R3H8 397 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SORBS2O94875 1100 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 DDCP20711 480 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 BDH1Q02338 343 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HIST2H3PS2Q5TEC6 136 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 HAS2Q92819 552 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 SDSLQ96GA7 329 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 TRMT2BQ96GJ1 504 aaKnown RBP9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PLCXD1Q9NUJ7 323 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 PPP1R14DQ9NXH3 145 aa9.37□□□□□ -0.91
COL4A6-208ENST00000538570 ZNF840PA6NDX5 716 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 UGDHO60701 494 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 SEC14L2O76054 403 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 ARSBP15848 533 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 DCTP40126 519 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 PITX1P78337 314 aaPredicted RBP9.36□□□□□ -0.91
COL4A6-208ENST00000538570 RNF32Q9H0A6 362 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 HRH4Q9H3N8 390 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 TESQ9UGI8 421 aaKnown RBP9.36□□□□□ -0.91
COL4A6-208ENST00000538570 C10orf71Q711Q0 1435 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 C5AR1P21730 350 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 OTX2P32243 289 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 ADARB1P78563 741 aaKnown RBP9.36□□□□□ -0.91
COL4A6-208ENST00000538570 HHEXQ03014 270 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 SERTAD2Q14140 314 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 SPCS2Q15005 226 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 CST6Q15828 149 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 WDTC1Q8N5D0 677 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 LMO3Q8TAP4 145 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 SLC38A1Q9H2H9 487 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 CYB5R1Q9UHQ9 305 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 SNED1Q8TER0 1413 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 A0A1W2PQ09 198 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 FZD9O00144 591 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 RFXAPO00287 272 aa9.36□□□□□ -0.91
COL4A6-208ENST00000538570 RNASET2O00584 256 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms