RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 SIRT4Q9Y6E7 314 aaPredicted RBP12.9□□□□□ -0.34
HDAC1-206ENST00000476391 KANTRA0A1W2PQU2 76 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 OR2W5A6NFC9 320 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 PLPP2O43688 288 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 CD63P08962 238 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 SNRPBP14678 240 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ZNF345Q14585 488 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ZNF805Q5CZA5 627 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 UBE2NLQ5JXB2 153 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 MARCH8Q5T0T0 291 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 HEPHL1Q6MZM0 1159 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 TSSK4Q6SA08 328 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ESPNLQ6ZVH7 1005 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 LINGO2Q7L985 606 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 CLDN19Q8N6F1 224 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 C15orf54Q8N8G6 183 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 OR4D9Q8NGE8 314 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 STK35Q8TDR2 534 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 CPNE4Q96A23 557 aaPredicted RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 MTERF1Q99551 399 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 GPA33Q99795 319 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 TMPRSS5Q9H3S3 457 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 BRD9Q9H8M2 597 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 GPBP1L1Q9HC44 474 aaPredicted RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ACSS1Q9NUB1 689 aaPredicted RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ANKRD20A5PA0PJZ0 165 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 POM121BA6NF01 834 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 WASH3PC4AMC7 463 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 MCIDASD6RGH6 385 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 TXNL1O43396 289 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 VEGFDO43915 354 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ATF1P18846 271 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 CCR7P32248 378 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ACTR1BP42025 376 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 GPR15P49685 360 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 PRR5P85299 388 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 SORDQ00796 357 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 OC90Q02509 493 aaPredicted RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 C9orf152Q5JTZ5 239 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 HENMT1Q5T8I9 393 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 RHOUQ7L0Q8 258 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 IQCHQ86VS3 1027 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 KCNRGQ8N5I3 272 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 OR5W2Q8NH69 310 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 OR5AK3PQ8NH89 298 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ABHD4Q8TB40 342 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 MRPL38Q96DV4 380 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 ZC3H10Q96K80 434 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 LINC00597Q9H2U6 94 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 EGLN3Q9H6Z9 239 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 AFF4Q9UHB7 1163 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 PIN4Q9Y237 131 aaKnown RBP12.89□□□□□ -0.35
HDAC1-206ENST00000476391 PRKAB1Q9Y478 270 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 MYO16Q9Y6X6 1858 aa12.89□□□□□ -0.35
HDAC1-206ENST00000476391 TRAV1-2A0A0B4J238 106 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 A0A1B0GV90 55 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 GNG14A0A1W2PPG7 69 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 LOC390937A0A1W2PQ73 354 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 ANKRD61A6NGH8 418 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 E7EQ34 232 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 E9PI62 339 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 J3QRE1 110 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 GOSR2O14653 212 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 PTGESO14684 152 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 LILRB5O75023 590 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 RDH16O75452 317 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 RB1P06400 928 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 EPXP11678 715 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 MAT2AP31153 395 aaKnown RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 TIA1P31483 386 aaKnown RBP eCLIP12.88□□□□□ -0.353e-6■■■■□ 21.3
HDAC1-206ENST00000476391 SEMG2Q02383 582 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 IRF8Q02556 426 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 PIN1Q13526 163 aaPredicted RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 UBE2R2Q712K3 238 aaPredicted RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 SLC36A1Q7Z2H8 476 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 ZNF546Q86UE3 836 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 RBM45Q8IUH3 476 aaKnown RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 ZSCAN1Q8NBB4 408 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 MORN4Q8NDC4 146 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 OR52B4Q8NGK2 314 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 OR52I2Q8NH67 350 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 BRIX1Q8TDN6 353 aaKnown RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 PXYLP1Q8TE99 480 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 ACBD6Q9BR61 282 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 FNDC11Q9BVV2 318 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 SLC12A9Q9BXP2 914 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 MRPL17Q9NRX2 175 aaKnown RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 MED17Q9NVC6 651 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 PCDHGC4Q9Y5F7 938 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 A0A1W2PQH9 124 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 GPR32O75388 356 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 SLC25A12O75746 678 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 IGHV2-5P01817 119 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 HOXC4P09017 264 aaPredicted RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 GKN3PP0CG01 181 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 AGAP20933 346 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 HOXD9P28356 352 aaPredicted RBP12.88□□□□□ -0.35
HDAC1-206ENST00000476391 LAP3P28838 519 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 HOXA6P31267 233 aa12.88□□□□□ -0.35
HDAC1-206ENST00000476391 CTSOP43234 321 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms