RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 OR5K3A6NET4 321 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 GABRPO00591 440 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 GNB5O14775 395 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 AKAP8O43823 692 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 MRPL3P09001 348 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 CLUP10909 449 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 MAP3K8P41279 467 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 EMDP50402 254 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 RPS7P62081 194 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 KCNJ8Q15842 424 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 DDI2Q5TDH0 399 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 NIPAL3Q6P499 406 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 CD200R1LQ6Q8B3 271 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 OOSP2Q86WS3 158 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 FAM160A2Q8N612 972 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 ATP6V1C2Q8NEY4 427 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 KIR2DS5A0A0G2JLQ3 304 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 A0A0G2JNG1 304 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 SPTY2D1-AS1A0A0U1RR47 76 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 TRDV1A0A1B0GX56 115 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 KIR2DS3K7RE56 304 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 IGKV1D-16P01601 117 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 FGF9P31371 208 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 OR2B6P58173 313 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 MAT1AQ00266 395 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 PSG6Q00889 435 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 KIR2DS5Q14953 304 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 TMEM44Q2T9K0 475 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 ARMC6Q6NXE6 501 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 ARIH2OSQ8N7S6 290 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 CYB561A3Q8NBI2 242 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 RLN3Q8WXF3 142 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 MED18Q9BUE0 208 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 PRDM9Q9NQV7 894 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 C2orf42Q9NWW7 574 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 FLRT3Q9NZU0 649 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 FBXL4Q9UKA2 621 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 DTX4Q9Y2E6 619 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 RBMX2Q9Y388 322 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 MED31Q9Y3C7 131 aa16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 SIRT4Q9Y6E7 314 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-201ENST00000291842 TMEM221A6NGB7 291 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 SHISA7A6NL88 538 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 C2CD4DB7Z1M9 353 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 TGFBR3LH3BV60 316 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 TFECO14948 347 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 NOS3P29474 1203 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 BMP8BP34820 402 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 RAB38P57729 211 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 FOXK2Q01167 660 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 CCINQ13939 588 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 AMZ1Q400G9 498 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 PYDC2Q56P42 97 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 MEPCEQ7L2J0 689 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 BMP8AQ7Z5Y6 402 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 NEIL3Q8TAT5 605 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 PTP4A1Q93096 173 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 PEX11GQ96HA9 241 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC9B1P1A6NJY1 282 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 HRO43593 1189 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 HPGDSO60760 199 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 GYPBP06028 91 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 MAZP56270 477 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 PRPF38BQ5VTL8 546 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 CDK20Q8IZL9 346 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 RNF113BQ8IZP6 322 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 DEFB119Q8N690 84 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC37A3Q8NCC5 494 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 OR10H4Q8NGA5 316 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 ZDHHC1Q8WTX9 485 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 ALG8Q9BVK2 526 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 MMP28Q9H239 520 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 C8orf33Q9H7E9 229 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 TMEM27Q9HBJ8 222 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 SIGLEC7Q9Y286 467 aa16.97■□□□□ 0.31
SHKBP1-201ENST00000291842 J3QRE1 110 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 CSF3P09919 207 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 FAM53BQ14153 422 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 MANEAQ5SRI9 462 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 ZCCHC12Q6PEW1 402 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 LNX2Q8N448 690 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 METTL27Q8N6F8 245 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 ACBD7Q8N6N7 88 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 OR52N1Q8NH53 320 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 FAM221BA6H8Z2 402 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 PRKNO60260 465 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 NKX2-2O95096 273 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 HLA-DPB1P04440 258 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 NGFRP08138 427 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC35E2P0CK97 266 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 S1PR1P21453 382 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 PPM1FP49593 454 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 NDUFAF6Q330K2 333 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 KIAA0895LQ68EN5 471 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 TMEM91Q6ZNR0 172 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 NCCRP1Q6ZVX7 275 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 GID4Q8IVV7 300 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 SMRP1Q8NCR6 262 aa16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 KISS1RQ969F8 398 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-201ENST00000291842 FAM210AQ96ND0 272 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms