RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GTF2IRD2Q86UP8 949 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 OR10D3Q8NH80 312 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 PHOSPHO1Q8TCT1 267 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 OTUB1Q96FW1 271 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 SH3YL1Q96HL8 342 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 GMPPAQ96IJ6 420 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 ADGRG7Q96K78 797 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 RNF145Q96MT1 663 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 OPN3Q9H1Y3 402 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 FANCFQ9NPI8 374 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 PLSCR4Q9NRQ2 329 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 RAB21Q9UL25 225 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 PCDHGB4Q9UN71 923 aa17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 V9GYY5 206 aaPredicted RBP17.12■□□□□ 0.33
CCDC28A-203ENST00000617445 ACANP16112 2415 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 WDR91A4D1P6 747 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 RNASET2O00584 256 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 ITM2AO43736 263 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 AQP8O94778 261 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 AK1P00568 194 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 PLGP00747 810 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 LINGO3P0C6S8 592 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 PABPC4LP0CB38 370 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 UGT2B10P36537 528 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 KCNJ5P48544 419 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 P2RX1P51575 399 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 CTBP2P56545 445 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 HBA1P69905 142 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 SIRPAP78324 504 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 CD226Q15762 336 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 CTU2Q2VPK5 515 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 PGS1Q32NB8 556 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 TNFAIP8L3Q5GJ75 292 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 TGIF2LYQ8IUE0 185 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 ZNF781Q8N8C0 355 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 VPS37AQ8NEZ2 397 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 OR8J2Q8NGG1 315 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 OR6K3Q8NGY3 331 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 OR2V1Q8NHB1 315 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 PKNOX2Q96KN3 472 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 WFIKKN1Q96NZ8 548 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 TMUB1Q9BVT8 246 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 AKTIPQ9H8T0 292 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 TIGARQ9NQ88 270 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 HAO1Q9UJM8 370 aa17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 GPC6Q9Y625 555 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-203ENST00000617445 UQCRHLA0A096LP55 91 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 GJE1A6NN92 205 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 GTPBP1O00178 669 aaKnown RBP17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 ATE1O95260 518 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 CD99P14209 185 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 SLC1A6P48664 564 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 PPP2R2AP63151 447 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 ZNF117Q03924 483 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 PDCD2Q16342 344 aaPredicted RBP17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 LILRA2Q8N149 483 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 ZNF610Q8N9Z0 462 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 OR7D2Q96RA2 312 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 MED18Q9BUE0 208 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 NMUR2Q9GZQ4 415 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 DTNAQ9Y4J8 743 aa17.1■□□□□ 0.33
CCDC28A-203ENST00000617445 NPIPB9F8W1W9 429 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 EIF4E2O60573 245 aaKnown RBP17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 SS18L1O75177 396 aaPredicted RBP17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 AGR2O95994 175 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 PPP3CBP16298 524 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 MATN1P21941 496 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 SLC6A8P48029 635 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 CARD18P57730 90 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 DPY19L1Q2PZI1 675 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 DEFB113Q30KQ7 82 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 CEP85LQ5SZL2 805 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 ANXA8L1Q5VT79 327 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 HBMQ6B0K9 141 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 PPP4R4Q6NUP7 873 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 C6orf120Q7Z4R8 191 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 POC1BQ8TC44 478 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 OIT3Q8WWZ8 545 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 OSTF1Q92882 214 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 ARL8AQ96BM9 186 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 KLHL15Q96M94 604 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 SDF2Q99470 211 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 DPY30Q9C005 99 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 ICAM5Q9UMF0 924 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 HEATR5AQ86XA9 2040 aa17.09■□□□□ 0.33
CCDC28A-203ENST00000617445 ARID1AO14497 2285 aa17.08■□□□□ 0.33
CCDC28A-203ENST00000617445 A0A0J9YW62 118 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 PRSS51A0A1B0GVH4 220 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 TNFSF11O14788 317 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 CXCL13O43927 109 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 STX11O75558 287 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 NUDT14O95848 222 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 GUSBP08236 651 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 CRYGSP22914 178 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 SOAT1P35610 550 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 CLNS1AP54105 237 aaKnown RBP17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 STX3Q13277 289 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 OR4F3Q6IEY1 312 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 STK32CQ86UX6 486 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms