RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	SPR	P35270	261 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	RORA	P35398	523 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	GCK	P35557	465 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PGD	P52209	483 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CDKN2D	P55273	166 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	UFM1	P61960	85 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	RPS15A	P62244	130 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	RPS18	P62269	152 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	GUCY2D	Q02846	1103 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PRDX1	Q06830	199 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	NAB1	Q13506	487 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ATP1A4	Q13733	1029 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CSHL1	Q14406	222 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	GRB7	Q14451	532 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZNF273	Q14593	569 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	FASTKD3	Q14CZ7	662 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	SPCS2	Q15005	226 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZIC1	Q15915	447 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	UAP1	Q16222	522 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	NDUFA9	Q16795	377 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CCSMST1	Q4G0I0	132 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	NKAIN1	Q4KMZ8	207 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	LACTB2	Q53H82	288 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	WASHC2D	Q5SRD0	308 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ATP1A1-AS1	Q5TC04	95 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	STEAP4	Q687X5	459 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PRMT9	Q6P2P2	845 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ERICH5	Q6P6B1	374 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	AGTRAP	Q6RW13	159 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CLEC2A	Q6UVW9	174 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	C3orf62	Q6ZUJ4	267 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	DTX2	Q86UW9	622 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	BATF2	Q8N1L9	274 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	METTL27	Q8N6F8	245 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ARFGAP2	Q8N6H7	521 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CSNK1A1L	Q8N752	337 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZNF321P	Q8N8H1	164 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	EIF1AD	Q8N9N8	165 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	OR2A1	Q8NGT9	310 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	FLVCR1-AS1	Q8TAF5	88 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PTER	Q96BW5	349 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ELP4	Q96EB1	424 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	DAZAP1	Q96EP5	407 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	SAMD8	Q96LT4	415 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	TSNARE1	Q96NA8	513 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	INTS14	Q96SY0	518 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	NRTN	Q99748	197 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CPNE1	Q99829	537 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	HAUS8	Q9BT25	410 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	SPRY4	Q9C004	299 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	MS4A7	Q9GZW8	240 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	RHOJ	Q9H4E5	214 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CNOT10	Q9H9A5	744 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PLEKHA2	Q9HB19	425 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	PARVB	Q9HBI1	364 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	POPDC3	Q9HBV1	291 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	DUSP22	Q9NRW4	184 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CUTC	Q9NTM9	273 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	ARL8B	Q9NVJ2	186 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	STOX2	Q9P2F5	926 aa	Predicted RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	CTNNAL1	Q9UBT7	734 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	NXT1	Q9UKK6	140 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	TMCO1	Q9UM00	188 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	OSGIN2	Q9Y236	505 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	MRPS7	Q9Y2R9	242 aa	Known RBP	4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	COMMD3-BMI1	R4GMX3	469 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	BPTF	Q12830	3046 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	FRY	Q5TBA9	3013 aa		4.35	□□□□□ -1.71
ZNF540-204	ENST00000586792	C15orf38-AP3S2	A0A0A6YYH1	394 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM230A	A0A1W2PPH8	454 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792		A0A1W2PPV9	198 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	TCRBV9S1A1T	A0A576	114 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZNF879	B4DU55	563 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	SMIM24	O75264	130 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	KRT6B	P04259	564 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	SERPIND1	P05546	499 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	KRT8	P05787	483 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	ENO1	P06733	434 aa	Known RBP	4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	GRP	P07492	148 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	NPS	P0C0P6	89 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	ERG	P11308	486 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	PCNA	P12004	261 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	GABRB1	P18505	474 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	CALB2	P22676	271 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	S100A1	P23297	94 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	F8A1	P23610	371 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	MC5R	P33032	325 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	KRT6C	P48668	564 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	CCR8	P51685	355 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	RAB10	P61026	200 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	ATP6V0D1	P61421	351 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	PHEX	P78562	749 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	PMP22	Q01453	160 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	SPIB	Q01892	262 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	RGS1	Q08116	209 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	NAE1	Q13564	534 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	FASTK	Q14296	549 aa	Known RBP	4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	RBBP7	Q16576	425 aa		4.34	□□□□□ -1.71
ZNF540-204	ENST00000586792	GLE1	Q53GS7	698 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms